; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G010180 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G010180
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 13
Genome locationCmo_Chr17:8725037..8728343
RNA-Seq ExpressionCmoCh17G010180
SyntenyCmoCh17G010180
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003195 - Transcription initiation factor IID, subunit 13
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]7.7e-6295.59Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPS G SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

XP_022953440.1 transcription initiation factor TFIID subunit 13 [Cucurbita moschata]7.4e-65100Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

XP_022991537.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima]3.7e-6499.26Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPS GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

XP_023547584.1 transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo]8.2e-6498.53Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPS GSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]5.9e-6295.59Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPS GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

TrEMBL top hitse value%identityAlignment
A0A1S3BRL0 transcription initiation factor TFIID subunit 133.1e-6195.56Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN S GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVD
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 133.1e-6195.56Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN S GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVD
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 133.7e-6295.59Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPS G SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

A0A6J1GN10 transcription initiation factor TFIID subunit 133.6e-65100Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

A0A6J1JWI2 transcription initiation factor TFIID subunit 131.8e-6499.26Show/hide
Query:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPS GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q148M7 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q15543 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q5R9W6 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q6NQH4 Transcription initiation factor TFIID subunit 133.4e-3664.29Show/hide
Query:  NNPSGGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+  +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSGGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 132.4e-3764.29Show/hide
Query:  NNPSGGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+  +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSGGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATCCATCAGGTGGATCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAACGAGGGGTTTTTCAAAAAGAATTGCAGCA
CATGATGTATGGTTTTGGAGATGACGCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTGTATAAAGCCCAGGAGA
TTGGATCCAAAAGGGGAAAACTATCTGTAGAAGACTTTTTGTATCTAATGCGCAAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTG
AAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAG
mRNA sequenceShow/hide mRNA sequence
CGATTGAACACCTTTGGCGGCAGAAGAGTTTAAGCTCCGGCGAATCTCATGCGGTGACTCGGATTCTCCATCTCCGATTATTTTCGCCTTGATTATTGTGGGAAGATCGT
GAAGATGAATAATCCATCAGGTGGATCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAACGAGGGGTTTTTCAAAAAGAATTGC
AGCACATGATGTATGGTTTTGGAGATGACGCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTGTATAAAGCCCAG
GAGATTGGATCCAAAAGGGGAAAACTATCTGTAGAAGACTTTTTGTATCTAATGCGCAAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGA
GCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAGAGTTTACAACAGAAACCAAAGTAAT
GATAGGAAGACATTTGGGGATCATTTGTTGCAGCACGGACAAAGTTCATGTCAATATGGTCAACCGACAGGACAGGCATTTGAAGCTACCTTTTTCTGCAGCCCAAAGGG
TCCATGGTAGGCAGGGTAAAGCAAAGCAATTAGCTTTAGCCCCAACCTACTTGTAAAGGTGGGGTCTTCCCTTCCCTTCCCTATCCTACGCACTCCTTTTGGAATTAATG
AAATAAACACCTCTTTTCTTTTTAACGTTTCTGGCTTACCTTATCTGTGATTACTTCTGACTTGGCTACCTTCAATTTGTTAGAATCTCCTAATCAGAGAGAGCAAACAA
CTTAGGTCTTAGTTCTGAACTAATTTTTAGGAAGTTGTTCTCTGCAGGTCAAAACAAGTGTTATATATACCTACC
Protein sequenceShow/hide protein sequence
MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEEL
KQARRAFEIDEDKLKKAFEEDEKVDQ