; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G010230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G010230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger protein 6-like
Genome locationCmo_Chr17:8753271..8753711
RNA-Seq ExpressionCmoCh17G010230
SyntenyCmoCh17G010230
Gene Ontology termsGO:0009736 - cytokinin-activated signaling pathway (biological process)
GO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0010090 - trichome morphogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044299 - Zinc finger protein GIS3/ZFP5/ZFP6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575791.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. sororia]2.6e-7697.95Show/hide
Query:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYTGSSGGSRILPPSRNGYFS
        MSILKLFGFPLVEHDGVQPET EG GGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYTGSSGGSRILPPSRNGYFS
Subjt:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYTGSSGGSRILPPSRNGYFS

Query:  AAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL
        AAY GVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL
Subjt:  AAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL

XP_022991778.1 zinc finger protein 6-like [Cucurbita maxima]6.3e-7089.54Show/hide
Query:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT-------GSSGGSRILPP
        MSILKLFGFPLVEH+GVQPETPEG GGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT       GSSG SRILP 
Subjt:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT-------GSSGGSRILPP

Query:  SRNGYFSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL
        SRN YF+AAYGGVSASS R MFGKMES GCKLDGEKGLPNHVGAVDLHLKLTL
Subjt:  SRNGYFSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL

XP_023522572.1 zinc finger protein GIS-like [Cucurbita pepo subsp. pepo]7.9e-7394.59Show/hide
Query:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT--GSSGGSRILPPSRNGY
        MSILKLFGFPLVEHDGVQPETPEG GGDINSD DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT  GSSGGSRILPPSRNGY
Subjt:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT--GSSGGSRILPPSRNGY

Query:  FSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL
        F+AAYGGVSASS R MFGKMES GCKLDGEKGLPNHVGAVDLHLKLTL
Subjt:  FSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL

XP_023549128.1 zinc finger protein GIS-like [Cucurbita pepo subsp. pepo]7.2e-6694.12Show/hide
Query:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT--GSSGGSRILPPSRNGY
        MSILKLFGFPLVEHDGVQPETPEG GGDINSD DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT  GSSGGSRILPPSRNGY
Subjt:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT--GSSGGSRILPPSRNGY

Query:  FSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNH
        F+AAYGGVSASS R MFGKMES GCKLDGEKGLPNH
Subjt:  FSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNH

XP_023549396.1 zinc finger protein GIS-like [Cucurbita pepo subsp. pepo]1.1e-6694.85Show/hide
Query:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT--GSSGGSRILPPSRNGY
        MSILKLFGFPLVEHDGVQPETPEG GGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT  GSSGGSRILPPSRNGY
Subjt:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT--GSSGGSRILPPSRNGY

Query:  FSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNH
        F+AAYGGVSASS R MFGKMES GCKLDGEKGLPNH
Subjt:  FSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNH

TrEMBL top hitse value%identityAlignment
A0A0A0K5R1 C2H2-type domain-containing protein9.9e-4567.88Show/hide
Query:  SILKLFGFPLVEHDGVQPETPEGCGG--DINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH--ALRPPPLYT--------GSSGGSR
        SILKLFGFPLVEHD   PETP+G GG     S+DDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH  ALRPP LY+        G  G SR
Subjt:  SILKLFGFPLVEHDGVQPETPEGCGG--DINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH--ALRPPPLYT--------GSSGGSR

Query:  ILPPSR--NGYF--SAAYGGVSASSRRRMF-----GKMESLGCKLDGEKGLPNHVGAVDLHLKLT
        IL  +   NGYF  +AAYGGVSASS R MF     G ME+ GCKL GEKGL      VDLHLKL+
Subjt:  ILPPSR--NGYF--SAAYGGVSASSRRRMF-----GKMESLGCKLDGEKGLPNHVGAVDLHLKLT

A0A1S3BSU1 zinc finger protein 6-like7.8e-5070.66Show/hide
Query:  SILKLFGFPLVEHDGVQPETPEGCGG----DINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH--ALRPPPLYT----------GSS
        SILKLFGFPLVEHD   PETP+G GG     INSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH  ALRPP LY+          G  
Subjt:  SILKLFGFPLVEHDGVQPETPEGCGG----DINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH--ALRPPPLYT----------GSS

Query:  GGSRILPPSRNGYF--SAAYGGVSASSRRRMF-----GKMESLGCKLDGEKGLPNHVGAVDLHLKLT
        GGSRILP + NGYF  +AAYGGVSASS R MF     GKME+ GCKL GEKGL      VDLHLKL+
Subjt:  GGSRILPPSRNGYF--SAAYGGVSASSRRRMF-----GKMESLGCKLDGEKGLPNHVGAVDLHLKLT

A0A5D3D1T3 Zinc finger protein 6-like1.7e-4969.41Show/hide
Query:  SILKLFGFPLVEHDGVQPETPEGCGG----DINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH--ALRPPPLYT-------------
        SILKLFGFPLVEHD   PETP+G GG     INSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH  ALRPP LY+             
Subjt:  SILKLFGFPLVEHDGVQPETPEGCGG----DINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH--ALRPPPLYT-------------

Query:  GSSGGSRILPPSRNGYF--SAAYGGVSASSRRRMF-----GKMESLGCKLDGEKGLPNHVGAVDLHLKLT
        G  GGSRILP + NGYF  +AAYGGVSASS R MF     GKME+ GCKL GEKGL      VDLHLKL+
Subjt:  GSSGGSRILPPSRNGYF--SAAYGGVSASSRRRMF-----GKMESLGCKLDGEKGLPNHVGAVDLHLKLT

A0A6J1JX90 zinc finger protein 6-like3.0e-7089.54Show/hide
Query:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT-------GSSGGSRILPP
        MSILKLFGFPLVEH+GVQPETPEG GGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT       GSSG SRILP 
Subjt:  MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYT-------GSSGGSRILPP

Query:  SRNGYFSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL
        SRN YF+AAYGGVSASS R MFGKMES GCKLDGEKGLPNHVGAVDLHLKLTL
Subjt:  SRNGYFSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL

A0A6J1KTC7 zinc finger protein GIS3-like4.1e-4363.19Show/hide
Query:  SILKLFGFPLVEHDGVQPETPEGCGG-DINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH--------ALRPPPLYT----------
        +ILKLFGFPLVEHD + P TP+G GG D NSD DRKFRCQFC RVFANSQALGGHQNAHKRERQRAKRALYFH        ALRPPP Y+          
Subjt:  SILKLFGFPLVEHDGVQPETPEGCGG-DINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH--------ALRPPPLYT----------

Query:  GSSGGSRILPPSRNGYFSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLT
        G   G R LP S +GYF+AAYGGVSA S R MFG          GEKG  + V  VDLHLKL+
Subjt:  GSSGGSRILPPSRNGYFSAAYGGVSASSRRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLT

SwissProt top hitse value%identityAlignment
Q39265 Zinc finger protein 66.6e-1457.35Show/hide
Query:  SILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA
        S LKLFG  L+E   VQ ++ E   G  +  + RK+ CQ+C R FANSQALGGHQNAHK+ERQ  KRA
Subjt:  SILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA

Q39266 Zinc finger protein 74.9e-0937.17Show/hide
Query:  LVEHDGVQPETPEGCGGDINSDDD--------------------------------RKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALY----FHA
        + E D    ETP   GG+ +S+ D                                R F C +CRR F +SQALGGHQNAHKRER  AKRA++    F  
Subjt:  LVEHDGVQPETPEGCGGDINSDDD--------------------------------RKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALY----FHA

Query:  LRPPPLYTGSSGG
           P  YT SS G
Subjt:  LRPPPLYTGSSGG

Q84WI0 Zinc finger protein GIS5.8e-1038.93Show/hide
Query:  QPETPEGCGGDINSDD-----DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRAL---YFHALRPPPLYTGSSGGSRILPPSRNGYFSAA--YGGVS
        + E  E   GD ++D+     +R+F C +C R F  SQALGGHQNAHKRERQ AKR +   ++H    P  Y       R  P   NG  +AA  YGG S
Subjt:  QPETPEGCGGDINSDD-----DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRAL---YFHALRPPPLYTGSSGGSRILPPSRNGYFSAA--YGGVS

Query:  ASSRRRMFGKMESLGCKLDGEKGLPNHVGAV
        +  +   +    S G +L G   LP  V  V
Subjt:  ASSRRRMFGKMESLGCKLDGEKGLPNHVGAV

Q9C9H1 Zinc finger protein GIS36.4e-0957.41Show/hide
Query:  GVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA
        GV+     G GG      +RK+ CQ+C R F NSQALGGHQNAHK+ERQ+ KRA
Subjt:  GVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA

Q9FG05 Zinc finger protein GIS21.9e-0841.25Show/hide
Query:  LKLFGFPL-VEHDGVQPETPEGCGGDINSDD--DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR-------ALYFH
        ++LFGF     H+  + +       +   DD  +++F+C +C R F  SQALGGHQNAHKRERQ+ KR       A +FH
Subjt:  LKLFGFPL-VEHDGVQPETPEGCGGDINSDD--DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR-------ALYFH

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 73.5e-1037.17Show/hide
Query:  LVEHDGVQPETPEGCGGDINSDDD--------------------------------RKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALY----FHA
        + E D    ETP   GG+ +S+ D                                R F C +CRR F +SQALGGHQNAHKRER  AKRA++    F  
Subjt:  LVEHDGVQPETPEGCGGDINSDDD--------------------------------RKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALY----FHA

Query:  LRPPPLYTGSSGG
           P  YT SS G
Subjt:  LRPPPLYTGSSGG

AT1G67030.1 zinc finger protein 64.7e-1557.35Show/hide
Query:  SILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA
        S LKLFG  L+E   VQ ++ E   G  +  + RK+ CQ+C R FANSQALGGHQNAHK+ERQ  KRA
Subjt:  SILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA

AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein4.6e-1057.41Show/hide
Query:  GVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA
        GV+     G GG      +RK+ CQ+C R F NSQALGGHQNAHK+ERQ+ KRA
Subjt:  GVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA

AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein4.1e-1138.93Show/hide
Query:  QPETPEGCGGDINSDD-----DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRAL---YFHALRPPPLYTGSSGGSRILPPSRNGYFSAA--YGGVS
        + E  E   GD ++D+     +R+F C +C R F  SQALGGHQNAHKRERQ AKR +   ++H    P  Y       R  P   NG  +AA  YGG S
Subjt:  QPETPEGCGGDINSDD-----DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRAL---YFHALRPPPLYTGSSGGSRILPPSRNGYFSAA--YGGVS

Query:  ASSRRRMFGKMESLGCKLDGEKGLPNHVGAV
        +  +   +    S G +L G   LP  V  V
Subjt:  ASSRRRMFGKMESLGCKLDGEKGLPNHVGAV

AT5G06650.1 C2H2 and C2HC zinc fingers superfamily protein1.3e-0941.25Show/hide
Query:  LKLFGFPL-VEHDGVQPETPEGCGGDINSDD--DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR-------ALYFH
        ++LFGF     H+  + +       +   DD  +++F+C +C R F  SQALGGHQNAHKRERQ+ KR       A +FH
Subjt:  LKLFGFPL-VEHDGVQPETPEGCGGDINSDD--DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR-------ALYFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATTCTCAAGCTATTCGGGTTCCCACTCGTCGAGCACGACGGCGTTCAACCGGAAACCCCCGAAGGGTGTGGCGGCGATATCAACTCCGACGACGACAGAAAGTT
CCGCTGTCAATTCTGCCGCCGAGTATTTGCCAACTCGCAGGCCCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCCAAAGGGCCAAACGCGCCCTTTATTTCCACG
CACTCCGACCGCCGCCGCTTTACACTGGCAGTAGTGGTGGTTCTAGAATTCTGCCACCGAGCCGCAACGGGTACTTTTCGGCCGCGTACGGCGGCGTATCGGCGTCATCA
CGGCGGCGGATGTTCGGAAAAATGGAATCTTTAGGGTGTAAATTGGATGGTGAAAAGGGATTACCAAATCATGTGGGTGCTGTTGATCTTCATCTTAAATTAACTTTATG
A
mRNA sequenceShow/hide mRNA sequence
ATGTCCATTCTCAAGCTATTCGGGTTCCCACTCGTCGAGCACGACGGCGTTCAACCGGAAACCCCCGAAGGGTGTGGCGGCGATATCAACTCCGACGACGACAGAAAGTT
CCGCTGTCAATTCTGCCGCCGAGTATTTGCCAACTCGCAGGCCCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCCAAAGGGCCAAACGCGCCCTTTATTTCCACG
CACTCCGACCGCCGCCGCTTTACACTGGCAGTAGTGGTGGTTCTAGAATTCTGCCACCGAGCCGCAACGGGTACTTTTCGGCCGCGTACGGCGGCGTATCGGCGTCATCA
CGGCGGCGGATGTTCGGAAAAATGGAATCTTTAGGGTGTAAATTGGATGGTGAAAAGGGATTACCAAATCATGTGGGTGCTGTTGATCTTCATCTTAAATTAACTTTATG
A
Protein sequenceShow/hide protein sequence
MSILKLFGFPLVEHDGVQPETPEGCGGDINSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHALRPPPLYTGSSGGSRILPPSRNGYFSAAYGGVSASS
RRRMFGKMESLGCKLDGEKGLPNHVGAVDLHLKLTL