; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G010270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G010270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCmo_Chr17:8762706..8763182
RNA-Seq ExpressionCmoCh17G010270
SyntenyCmoCh17G010270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046672.1 extensin-2 [Cucumis melo var. makuwa]2.6e-5376.73Show/hide
Query:  MADLTSIFLTLFLISLSKFS-LSSPTVSARDQVGCSMCASCDNPCQL--PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPP
        MA+   IFLT FL SL KFS LSS +  A+DQVGCSMC++CDNPCQL  PPPPP +V+CPPPPS  PPPPPSPPPPL T +CPPPPSPPSCDACVYPSPP
Subjt:  MADLTSIFLTLFLISLSKFS-LSSPTVSARDQVGCSMCASCDNPCQL--PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPP

Query:  PPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFIL
        PPSS+QPY P+DGGQ+PG+APPPPNPILPYFPYYYY+PPS S KSVPFSWK LPL F++
Subjt:  PPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFIL

KAG6575794.1 hypothetical protein SDJN03_26433, partial [Cucurbita argyrosperma subsp. sororia]2.2e-6894.3Show/hide
Query:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS
        MADLTSIFLTLFLISLSKFS SS TVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPL TPECPPPPSPPSCDACVYPSPPPP 
Subjt:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS

Query:  SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
             TPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
Subjt:  SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL

XP_022953998.1 leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]4.9e-76100Show/hide
Query:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS
        MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS
Subjt:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS

Query:  SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
        SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
Subjt:  SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL

XP_022991777.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.5e-6487.12Show/hide
Query:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQL-----PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPS
        MADLTSIFLTLFL SLSKFSLS  TVSARDQVGCSMC+SCDNPCQL     PPPPPL+VDCPPPPSPPPPP P        PECPPPPSPPSCDACVYPS
Subjt:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQL-----PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPS

Query:  PPPPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
        PPPPSSIQPYTPTDGGQYPG+APPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLF+LRL
Subjt:  PPPPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL

XP_023549397.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]3.6e-7195.57Show/hide
Query:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS
        MADLTSIFLTLFLISLSKFSLSS TVSARDQVGCSMC+SCDNPCQLPPPPPLIVDC    SPPPPPPPSPPPPL TPECPPPPSPPSCDACVYPSPPPPS
Subjt:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS

Query:  SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
        SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
Subjt:  SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL

TrEMBL top hitse value%identityAlignment
A0A0A0K5N4 Uncharacterized protein1.6e-5377.02Show/hide
Query:  MADLTSIFLTLFLISLSKFS-LSSPTVSARDQVGCSMCASCDNPCQL--PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPP
        MA+L SIFLT FL+SL+KFS LSS T  A+DQVGCSMC++CDNPCQL  PPPPP +V+CPPP  PP PPPPSPPPPL T +CPPPPSPPSCDACVYPSPP
Subjt:  MADLTSIFLTLFLISLSKFS-LSSPTVSARDQVGCSMCASCDNPCQL--PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPP

Query:  PPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
        PPSS+QPY P+ GGQ+PG+APPPPNPILPYFPYYYY+PPS S KSVPFSWKFL L F++ L
Subjt:  PPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL

A0A5D3D2P5 Extensin-21.3e-5376.73Show/hide
Query:  MADLTSIFLTLFLISLSKFS-LSSPTVSARDQVGCSMCASCDNPCQL--PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPP
        MA+   IFLT FL SL KFS LSS +  A+DQVGCSMC++CDNPCQL  PPPPP +V+CPPPPS  PPPPPSPPPPL T +CPPPPSPPSCDACVYPSPP
Subjt:  MADLTSIFLTLFLISLSKFS-LSSPTVSARDQVGCSMCASCDNPCQL--PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPP

Query:  PPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFIL
        PPSS+QPY P+DGGQ+PG+APPPPNPILPYFPYYYY+PPS S KSVPFSWK LPL F++
Subjt:  PPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFIL

A0A6J1GPW6 leucine-rich repeat extensin-like protein 32.4e-76100Show/hide
Query:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS
        MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS
Subjt:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPS

Query:  SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
        SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
Subjt:  SIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL

A0A6J1JMT5 leucine-rich repeat extensin-like protein 37.1e-6587.12Show/hide
Query:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQL-----PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPS
        MADLTSIFLTLFL SLSKFSLS  TVSARDQVGCSMC+SCDNPCQL     PPPPPL+VDCPPPPSPPPPP P        PECPPPPSPPSCDACVYPS
Subjt:  MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQL-----PPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPS

Query:  PPPPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
        PPPPSSIQPYTPTDGGQYPG+APPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLF+LRL
Subjt:  PPPPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL

A0A6J1KR41 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like6.9e-3664.29Show/hide
Query:  MADLTSIFLTLFLISLSKFS-LSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPP
        MA+L SI+ T  L +LSKFS LSS T  A+DQVGCSMC+SCDNPCQLPP             PPPPPP S  PP      PPPP PPSC  CV+PSP PP
Subjt:  MADLTSIFLTLFLISLSKFS-LSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPP

Query:  SSIQPYTPTDGGQYPGLA-PPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPL
        +S+QPY P DGGQ+PGLA PPPPNPILPY+PYYYY+PP+ SG+SV  SWK LPL
Subjt:  SSIQPYTPTDGGQYPGLA-PPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G06750.1 hydroxyproline-rich glycoprotein family protein3.1e-0440.71Show/hide
Query:  SLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPSSIQPYTPTD-GGQYPGLAP
        SL     S  + V C+MC+SCDNPC            P   SPPPPPP S     +    PPPPS  S     YP P        Y P    G Y    P
Subjt:  SLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPSSIQPYTPTD-GGQYPGLAP

Query:  PPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL
        PPPNPI+PYFP+YY+TPP G   S       L  LF + L
Subjt:  PPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL

AT3G22800.1 Leucine-rich repeat (LRR) family protein8.2e-0551.96Show/hide
Query:  CAS--CDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYT
        CAS  C  P   PPPPP     PPPP PPPPPPP PPPP   P   PPP PPS    VYP PPPP  + P  P+    YP   PPPP+P     PY Y +
Subjt:  CAS--CDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPSSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYT

Query:  PP
        PP
Subjt:  PP

AT4G16140.1 proline-rich family protein2.6e-1144.3Show/hide
Query:  FLTLFLISLSKFSLSSPTVSARDQVG-CSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPS----------PPSCDACVYPSP
        F T  L     F   + T+++  Q+  C+MC SCDNPCQ  P P      PPPPS P PPPPSP     T  CPPPPS          PP+  +  Y  P
Subjt:  FLTLFLISLSKFSLSSPTVSARDQVG-CSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPS----------PPSCDACVYPSP

Query:  PPPSSIQPY--TPTDGGQYPGLAPPPPNPILPYFPYYYYTPP-----SGSGKSVPFSW
        P  SS   Y   P  GG YP    PPPNPI+PYFP+YYY PP     SGS   + FS+
Subjt:  PPPSSIQPY--TPTDGGQYPGLAPPPPNPILPYFPYYYYTPP-----SGSGKSVPFSW

AT5G49280.1 hydroxyproline-rich glycoprotein family protein1.3e-1344.08Show/hide
Query:  SIFLTLFLISLSKFSLSSPTVSARDQ-VGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSC---DACVYPSP-----
        S  + + L+S+      +PTV+++D+ V C+MC+SCDNPC        +   PPPPSPPPP  P       T  CPPPPSPPS     +  YP P     
Subjt:  SIFLTLFLISLSKFSLSSPTVSARDQ-VGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSC---DACVYPSP-----

Query:  ----PPP----SSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSG
            PPP         Y P   G YP   PPPPNPI+PYFP+YY+TPP GSG
Subjt:  ----PPP----SSIQPYTPTDGGQYPGLAPPPPNPILPYFPYYYYTPPSGSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATCTCACCTCCATTTTCCTCACTCTCTTCCTCATTTCCCTCTCCAAATTCTCCCTCTCTTCGCCCACCGTCTCGGCCAGGGATCAGGTTGGCTGTTCCATGTG
CGCCAGTTGCGACAACCCATGTCAACTCCCGCCGCCGCCTCCGTTAATTGTTGACTGCCCACCGCCTCCATCACCGCCGCCCCCTCCACCTCCATCTCCTCCACCGCCAC
TCGCCACACCCGAATGCCCTCCGCCTCCCTCTCCCCCTTCGTGCGATGCATGCGTCTATCCTTCACCGCCGCCACCGTCCTCCATCCAGCCGTACACCCCAACAGACGGA
GGGCAATATCCCGGGCTTGCTCCGCCGCCGCCGAACCCAATTTTACCGTATTTTCCTTACTATTATTACACTCCGCCTTCTGGGTCTGGTAAATCCGTTCCATTTTCGTG
GAAGTTTTTGCCTTTGTTGTTCATTCTTCGACTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATCTCACCTCCATTTTCCTCACTCTCTTCCTCATTTCCCTCTCCAAATTCTCCCTCTCTTCGCCCACCGTCTCGGCCAGGGATCAGGTTGGCTGTTCCATGTG
CGCCAGTTGCGACAACCCATGTCAACTCCCGCCGCCGCCTCCGTTAATTGTTGACTGCCCACCGCCTCCATCACCGCCGCCCCCTCCACCTCCATCTCCTCCACCGCCAC
TCGCCACACCCGAATGCCCTCCGCCTCCCTCTCCCCCTTCGTGCGATGCATGCGTCTATCCTTCACCGCCGCCACCGTCCTCCATCCAGCCGTACACCCCAACAGACGGA
GGGCAATATCCCGGGCTTGCTCCGCCGCCGCCGAACCCAATTTTACCGTATTTTCCTTACTATTATTACACTCCGCCTTCTGGGTCTGGTAAATCCGTTCCATTTTCGTG
GAAGTTTTTGCCTTTGTTGTTCATTCTTCGACTCTAA
Protein sequenceShow/hide protein sequence
MADLTSIFLTLFLISLSKFSLSSPTVSARDQVGCSMCASCDNPCQLPPPPPLIVDCPPPPSPPPPPPPSPPPPLATPECPPPPSPPSCDACVYPSPPPPSSIQPYTPTDG
GQYPGLAPPPPNPILPYFPYYYYTPPSGSGKSVPFSWKFLPLLFILRL