CuGenDBv2

Gene ID	CmoCh17G010690
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Nucleolar protein 16
Genome location	Cmo_Chr17:8902833..8904119
RNA-Seq Expression	CmoCh17G010690
Synteny	CmoCh17G010690
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014368.1 hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-103

99.48

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRR GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_022954094.1 uncharacterized protein LOC111456462 [Cucurbita moschata]

2.3e-104

100

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

4.4e-103

98.96

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

1.7e-102

98.45

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYH CLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

8.0e-97

92.75

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WD+KA VIHNYKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS PPSD+P
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BSM4 Nucleolar protein 16

1.2e-93

90.67

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A5A7VLA5 Nucleolar protein 16

1.2e-93

90.67

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A6J1DE29 Nucleolar protein 16

5.8e-93

90.72

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDD
        MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS D
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDD

Query:  PDSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKR+DGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A6J1GRW5 Nucleolar protein 16

1.1e-104

100

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A6J1JMQ4 Nucleolar protein 16

2.1e-103

98.96

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

1.2e-66

63.27

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSL-PPSDD
        M RSRRKY+ SRAKV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ASVI NYKSFGV+SNPNLL +R+RTDH+++ D L VPP + PP+DD
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSL-PPSDD

Query:  P---DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILT
        P   +     SGS++EEDDLKTALGK+R+DGKSAPL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KLC RY    DKNP++++
Subjt:  P---DSVLDSSGSDVEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCAGGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCT
CCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCA
GTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAGGTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGAT
GTGGAAGAGGACGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGAGATGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAAT
CGAGAAGTATGGAGATGATCATGAGAGGATGTTCATGGACACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTT
TAGATAAGAATCCATTGATATTGACTCGTTAA

mRNA sequence

Show/hide mRNA sequence

CATCGTCTACGTCTAAACCCTAGCCACCAGTTGTTCTTTGAATTCACAGAGCGACAGAGAGAGATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCA
GGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCTCCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACG
AGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAG
GTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGAGA
TGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAGTATGGAGATGATCATGAGAGGATGTTCATGGACACAAAGC
TGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTTTAGATAAGAATCCATTGATATTGACTCGTTAAAGATCTTTCAAATTG
TTCTGTTACAGAGGTGAAATCAGATAAGGTATGATCATGAAATCTTATTGAGCAATATTGTTTTGAACCCTAATCTATGAGAGGCTTGAAAGATGGTTCATTCCCTTGCT
TGCTGTTTTCTTCCTTTCAAGGAAATGGCCAACCCATAATTCTAATTCTTGG

Protein sequence

Show/hide protein sequence

MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSD
VEEDDLKTALGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

CmoCh17G010690 (gene) of Cucurbita moschata (Rifu) v1 genome