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CmoCh17G011070 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G011070
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionclassical arabinogalactan protein 26
Genome locationCmo_Chr17:9089774..9090181
RNA-Seq ExpressionCmoCh17G011070
SyntenyCmoCh17G011070
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575865.1 hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia]6.2e-6499.26Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
Subjt:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

XP_022953817.1 classical arabinogalactan protein 26 [Cucurbita moschata]2.8e-64100Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
Subjt:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

XP_022991733.1 classical arabinogalactan protein 26 [Cucurbita maxima]1.7e-6196.3Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MASIFSLYIPIFMAYTASI  FSFASYPNHFPPLISSISAAPEFSPSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDA PAPEMPLPP
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        SQSLPFSAAATLNSGGWCWSIWVALTAAIV EVCR
Subjt:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

XP_023548939.1 classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]5.3e-6397.78Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MASIFSLYIPIFMAYTASI PFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        SQSLPFSA ATLNSGGWCWSIWVALTAAIVAEVCR
Subjt:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

XP_038876736.1 classical arabinogalactan protein 26-like [Benincasa hispida]1.2e-5185.4Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFS--PSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL
        MASIFSLYIPIFMAYTASILPFS ASYPN+ P LISSISAAPEFS  PSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM L
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFS--PSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL

Query:  PPSQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        PPSQSLPFSAA +LN  GWCW + VALT A+  E+CR
Subjt:  PPSQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

TrEMBL top hitse value%identityAlignment
A0A0A0K510 Uncharacterized protein6.1e-4984.56Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPP-LISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLP
        MASIFSLYIPIFMAYTAS+ PFSFASYPN FP  LISSISAAPEF  SPSP+PASDI+PLFPTPG ATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL 
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPP-LISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLP

Query:  PSQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        PSQSLPFS AA LNSGGWC S++VALT  +VAE+ R
Subjt:  PSQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

A0A1S3BRG9 classical arabinogalactan protein 261.3e-4375.54Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM
        MASIFSLYIPIFMAYTAS  PF+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI+PLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEM
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLPPSQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        PL P+ S+PFSAAA LNS GWC S+++AL  A+ AE+ R
Subjt:  PLPPSQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

A0A5A7UQZ3 Classical arabinogalactan protein 261.3e-4375.54Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM
        MASIFSLYIPIFMAYTAS  PF+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI+PLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEM
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLPPSQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        PL P+ S+PFSAAA LNS GWC S+++AL  A+ AE+ R
Subjt:  PLPPSQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

A0A6J1GPB2 classical arabinogalactan protein 261.4e-64100Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
Subjt:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

A0A6J1JX46 classical arabinogalactan protein 268.2e-6296.3Show/hide
Query:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MASIFSLYIPIFMAYTASI  FSFASYPNHFPPLISSISAAPEFSPSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDA PAPEMPLPP
Subjt:  MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR
        SQSLPFSAAATLNSGGWCWSIWVALTAAIV EVCR
Subjt:  SQSLPFSAAATLNSGGWCWSIWVALTAAIVAEVCR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47930.1 arabinogalactan protein 262.0e-0438.05Show/hide
Query:  IPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSP-------SPSPSPASDIAPLFPTPGGATLPPSS-----LPTIPSSPSPPNPDFMDAAPAPEM
        + +F A+T  +L     +  + F   +S+ISAAP F P       + +P+ + D +PLFPTPG + + PS      +PTIPSS SPPNPD +   P  E+
Subjt:  IPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSP-------SPSPSPASDIAPLFPTPGGATLPPSS-----LPTIPSSPSPPNPDFMDAAPAPEM

Query:  -----PLPPSQSL
             PLP S S+
Subjt:  -----PLPPSQSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTGCCTTTCTCCTTCGCTTCTTATCCCAACCACTTCCCTCCCCTCATTTCTTC
CATCTCCGCCGCGCCTGAATTTTCGCCCTCCCCTTCTCCGTCCCCGGCGTCGGACATTGCTCCGCTCTTTCCGACCCCCGGCGGTGCCACTCTTCCGCCGTCCTCTTTGC
CTACCATCCCCTCTAGCCCCAGCCCTCCGAACCCCGATTTTATGGACGCCGCACCGGCGCCGGAAATGCCTCTTCCACCGTCTCAGTCCTTGCCGTTCTCTGCCGCTGCT
ACTCTCAACTCCGGTGGGTGGTGTTGGTCGATTTGGGTGGCTCTTACGGCGGCTATCGTAGCGGAGGTTTGCCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTGCCTTTCTCCTTCGCTTCTTATCCCAACCACTTCCCTCCCCTCATTTCTTC
CATCTCCGCCGCGCCTGAATTTTCGCCCTCCCCTTCTCCGTCCCCGGCGTCGGACATTGCTCCGCTCTTTCCGACCCCCGGCGGTGCCACTCTTCCGCCGTCCTCTTTGC
CTACCATCCCCTCTAGCCCCAGCCCTCCGAACCCCGATTTTATGGACGCCGCACCGGCGCCGGAAATGCCTCTTCCACCGTCTCAGTCCTTGCCGTTCTCTGCCGCTGCT
ACTCTCAACTCCGGTGGGTGGTGTTGGTCGATTTGGGTGGCTCTTACGGCGGCTATCGTAGCGGAGGTTTGCCGGTGA
Protein sequenceShow/hide protein sequence
MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAA
TLNSGGWCWSIWVALTAAIVAEVCR