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CmoCh17G011960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G011960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPSII 6.1 kDa protein
Genome locationCmo_Chr17:9600453..9601608
RNA-Seq ExpressionCmoCh17G011960
SyntenyCmoCh17G011960
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575946.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.7e-6499.27Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVRSSLVQNRPLPAASP+PFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

XP_022954252.1 photosystem II reaction center W protein, chloroplastic [Cucurbita moschata]7.5e-65100Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

XP_022991740.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]1.0e-6196.35Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVRSSLVQNRP PAASP+PFLLGLPAL KKG VRCSMEGKANG+VENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

XP_023548627.1 photosystem II reaction center W protein, chloroplastic [Cucurbita pepo subsp. pepo]1.8e-6397.81Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA ATVRSSLVQNRPLPAASP+PFLLGLPALGKKGGVRCSMEGK NGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]6.1e-5990.51Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA AT R+SLVQNRPLPAASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein1.9e-5890.51Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVR+SLVQNR LP+ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        SNNLLGWILLGVF  IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein2.5e-5890.58Show/hide
Query:  MAAVTSAAAATVRSSLVQNRP-LPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR+SLVQNRP LP+ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATVRSSLVQNRP-LPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein2.1e-5789.86Show/hide
Query:  MAAVTSAAAATVRSSLVQNRP-LPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR+SLVQNRP LP+ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS L MGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATVRSSLVQNRP-LPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein3.6e-65100Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

A0A6J1JTT6 PSII 6.1 kDa protein4.9e-6296.35Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVRSSLVQNRP PAASP+PFLLGLPAL KKG VRCSMEGKANG+VENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic6.6e-3261.15Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALG-KKGGVRCSMEGKANGDVENKSSTLGMGASLVA-AAYAASMSSPAMALVDERLSTEGTGLPF
        MA+ T A+A+TV ++       P  + S  +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALG-KKGGVRCSMEGKANGDVENKSSTLGMGASLVA-AAYAASMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLSNNLLGWIL GVFG IW F+ +YTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic9.3e-3459.71Show/hide
Query:  MAAVTSAAAATV--RSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPF
        MA +T++++A++  R+SLV N  +   S SP +LGLP++ K+  V CS+E K +      ++   MGASL+AAA AA++S+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAATV--RSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLSNNLLGWIL GVFG IWA Y +Y S LEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.6e-2252.94Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGG--VRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPF
        MA V++AAA +V +  V   P          LGLP +  +    VRC+   +A       ++  G GASL+A A  A   +PAMALVDER+STEGTGL  
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGG--VRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESG
        GLSNNLLGWILLGVFG IW+ Y IYTS LEEDEESG
Subjt:  GLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.2e-0942.5Show/hide
Query:  STLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWAFYIIYTSTLE--EDEESGLSL
        S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +WA + I    L   ED + GL L
Subjt:  STLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWAFYIIYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W4.7e-3361.15Show/hide
Query:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALG-KKGGVRCSMEGKANGDVENKSSTLGMGASLVA-AAYAASMSSPAMALVDERLSTEGTGLPF
        MA+ T A+A+TV ++       P  + S  +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALG-KKGGVRCSMEGKANGDVENKSSTLGMGASLVA-AAYAASMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL
        GLSNNLLGWIL GVFG IW F+ +YTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCCGCCACCGTGCGCTCTTCTCTGGTTCAGAACCGCCCCCTGCCGGCGGCTTCACCCTCCCCATTCCTTCTTGGGTTGCCTGCTTT
GGGAAAGAAAGGAGGAGTTAGGTGTTCTATGGAAGGGAAGGCAAATGGAGATGTAGAAAACAAGTCGAGCACCTTAGGGATGGGCGCGTCGTTGGTAGCTGCGGCTTACG
CTGCGTCGATGTCGAGTCCAGCCATGGCTTTGGTGGATGAGAGGCTGAGCACTGAAGGGACTGGTCTTCCATTTGGTTTGAGCAACAATCTTCTCGGTTGGATTCTTCTT
GGCGTGTTTGGCTTCATATGGGCATTCTACATTATTTACACTTCTACTCTCGAAGAAGACGAAGAATCGGGCTTATCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCCCCTATCCAGCTTTGTGTGGTTGCCACTCAACACAAACAAATAATATTAACAAACCCTTTGATCGCCACTCCCCAAATTGCGTTTTCCCCCCATTTTCCTC
CCAAAGTTCAAGAGCAAAACAAGCAAATGGCCGCCGTCACCTCCGCCGCCGCCGCCACCGTGCGCTCTTCTCTGGTTCAGAACCGCCCCCTGCCGGCGGCTTCACCCTCC
CCATTCCTTCTTGGGTTGCCTGCTTTGGGAAAGAAAGGAGGAGTTAGGTGTTCTATGGAAGGGAAGGCAAATGGAGATGTAGAAAACAAGTCGAGCACCTTAGGGATGGG
CGCGTCGTTGGTAGCTGCGGCTTACGCTGCGTCGATGTCGAGTCCAGCCATGGCTTTGGTGGATGAGAGGCTGAGCACTGAAGGGACTGGTCTTCCATTTGGTTTGAGCA
ACAATCTTCTCGGTTGGATTCTTCTTGGCGTGTTTGGCTTCATATGGGCATTCTACATTATTTACACTTCTACTCTCGAAGAAGACGAAGAATCGGGCTTATCTCTTTAG
GTCATACTTGTCTGTCTTATTATTGTTGTTGTTGTAGATCGTTGTGTGGATATTCGCCTCTGGCTTGAATCGTATAACCTTTTGAGTTCGTGTCGTTGAAGCTGAAGCAA
ATTGGCTAAAAACTACTATATTTCATACATATCTCGACAAAGAATAAATGTATTTTATCATGGTAAAGTGAATGTGCTATGAGGATGGATTTTGTTAGACGGTATGATAT
TGTTCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTCCCCAAAATGCCTCACTCCAATGAAGTTAGTATTCCTCACTTATAAACCCATGATCACACCCTAAAT
TAGTCGATGTGGGACTTCCACCATCC
Protein sequenceShow/hide protein sequence
MAAVTSAAAATVRSSLVQNRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILL
GVFGFIWAFYIIYTSTLEEDEESGLSL