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CmoCh17G012090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G012090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionS-protein homolog
Genome locationCmo_Chr17:9690442..9691495
RNA-Seq ExpressionCmoCh17G012090
SyntenyCmoCh17G012090
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026247.1 pumilio-like protein 15-like [Cucumis melo var. makuwa]3.1e-2665.93Show/hide
Query:  NVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        NV++L L+ V F +ARV+ R+TLPPP  T Y +HV+NGLSN  LIVHCQSKD+DLG H+L NRGD+YQWNFKEN W TTLFWC+ EK  A+
Subjt:  NVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

XP_022933265.1 S-protein homolog 1-like [Cucurbita moschata]4.0e-2662.77Show/hide
Query:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        MI+N+V+  L TV    A+ V R+ LPPP P+ Y +HVVNGLS +GL+VHCQSKD+DLG H+LLN GD+YQWNFK N WGTTLFWC+ E   AY
Subjt:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

XP_022933333.1 S-protein homolog 1-like [Cucurbita moschata]4.0e-2662.77Show/hide
Query:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        MI+N+V+  L TV    A+ V R+ LPPP P+ Y +HVVNGLS +GL+VHCQSKD+DLG H+LLN GD+YQWNFK N WGTTLFWC+ E   AY
Subjt:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

XP_023549419.1 S-protein homolog 1-like [Cucurbita pepo subsp. pepo]1.9e-3995.12Show/hide
Query:  VTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        VTFA+ARVVTRITLPPPVPTTYN+HVVNGL+NVGLIVHCQSKDNDLG+HNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
Subjt:  VTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

XP_038896423.1 S-protein homolog 1-like [Benincasa hispida]4.0e-2663.44Show/hide
Query:  IRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        +RNVV+L L T     A+ + R ++PPP P+ Y VHVVNGLSN  ++VHCQSKD+DLG H+L+NRGD+YQWNFKEN WGTTLFWC+ EK  AY
Subjt:  IRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

TrEMBL top hitse value%identityAlignment
A0A5A7SNG3 S-protein homolog1.5e-2665.93Show/hide
Query:  NVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        NV++L L+ V F +ARV+ R+TLPPP  T Y +HV+NGLSN  LIVHCQSKD+DLG H+L NRGD+YQWNFKEN W TTLFWC+ EK  A+
Subjt:  NVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

A0A6J1EYX0 S-protein homolog7.4e-2661.7Show/hide
Query:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        MI+N+V+  L TV    A+ V R+ LPPP P+ Y +HVVNGLS +GL+VHCQSKD+DLG H LLN GD+YQWNFK N WGTTL+WC+ E   AY
Subjt:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

A0A6J1F497 S-protein homolog5.6e-2662.77Show/hide
Query:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        MI+N+V+  L TV    A+ V R+ LPP  P+ Y +HVVNGLSN+GL+VHCQSKD+DLG H+LLN GD+YQWNFK N WGTTLFWC+ E   AY
Subjt:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

A0A6J1F4F3 S-protein homolog1.9e-2662.77Show/hide
Query:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        MI+N+V+  L TV    A+ V R+ LPPP P+ Y +HVVNGLS +GL+VHCQSKD+DLG H+LLN GD+YQWNFK N WGTTLFWC+ E   AY
Subjt:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

A0A6J1F4G4 S-protein homolog1.9e-2662.77Show/hide
Query:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        MI+N+V+  L TV    A+ V R+ LPPP P+ Y +HVVNGLS +GL+VHCQSKD+DLG H+LLN GD+YQWNFK N WGTTLFWC+ E   AY
Subjt:  MIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

SwissProt top hitse value%identityAlignment
F4JLS0 S-protein homolog 13.3e-0735.87Show/hide
Query:  TRITLPPPVPTTYNVHVVNGL-SNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCTASRRTMIWEFIICLIR
        TR  + P + + + V VVNGL +   L +HC+SK++DLG  NL  R + + WNF EN+  +T FWC   K   +   +   + W+ +I   R
Subjt:  TRITLPPPVPTTYNVHVVNGL-SNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCTASRRTMIWEFIICLIR

O23020 S-protein homolog 51.2e-0437.1Show/hide
Query:  PPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFE
        PP      V + N +    L +HC+SK +DLG H ++    EY + F+ N+W +TLF+C F+
Subjt:  PPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFE

P0DN93 S-protein homolog 294.5e-0444.44Show/hide
Query:  VHVVNGLS-NVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRF
        V V N +S    L + C+SKD+DLG H LL+ G  + W F+ + + TTLF C+F
Subjt:  VHVVNGLS-NVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRF

Q2HQ46 S-protein homolog 742.1e-0633.62Show/hide
Query:  KKMIRNVVILLLITV-TFARARVVTRITLPPPVPTTYNVHVVNGL-SNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCT
        K+ I  +   L++T      AR  T   +  P  + + V V NGL +   L +HC+SK+NDLG  N L   D + WNF EN+  +TLFWC   K   +  
Subjt:  KKMIRNVVILLLITV-TFARARVVTRITLPPPVPTTYNVHVVNGL-SNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCT

Query:  ASRRTMIWEFIICLIR
             + W+ +I   R
Subjt:  ASRRTMIWEFIICLIR

Q9LW22 S-protein homolog 211.8e-0547.92Show/hide
Query:  LIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        L VHC+SK+ND+G    L  G+   ++FK N WGTT FWC   K   Y
Subjt:  LIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

Arabidopsis top hitse value%identityAlignment
AT3G26880.1 Plant self-incompatibility protein S1 family1.3e-0647.92Show/hide
Query:  LIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY
        L VHC+SK+ND+G    L  G+   ++FK N WGTT FWC   K   Y
Subjt:  LIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAY

AT4G16295.1 S-protein homologue 12.4e-0835.87Show/hide
Query:  TRITLPPPVPTTYNVHVVNGL-SNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCTASRRTMIWEFIICLIR
        TR  + P + + + V VVNGL +   L +HC+SK++DLG  NL  R + + WNF EN+  +T FWC   K   +   +   + W+ +I   R
Subjt:  TRITLPPPVPTTYNVHVVNGL-SNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCTASRRTMIWEFIICLIR

AT4G29035.1 Plant self-incompatibility protein S1 family1.5e-0733.62Show/hide
Query:  KKMIRNVVILLLITV-TFARARVVTRITLPPPVPTTYNVHVVNGL-SNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCT
        K+ I  +   L++T      AR  T   +  P  + + V V NGL +   L +HC+SK+NDLG  N L   D + WNF EN+  +TLFWC   K   +  
Subjt:  KKMIRNVVILLLITV-TFARARVVTRITLPPPVPTTYNVHVVNGL-SNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCT

Query:  ASRRTMIWEFIICLIR
             + W+ +I   R
Subjt:  ASRRTMIWEFIICLIR

AT5G04347.1 Plant self-incompatibility protein S1 family1.7e-0647.17Show/hide
Query:  VVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEK
        V N L+N  L V C+SKD++LG H +L  G   + NF +N+W  TLFWC   K
Subjt:  VVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEK

AT5G04350.1 Plant self-incompatibility protein S1 family7.6e-0750Show/hide
Query:  LIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEK
        L VHC+SKD+DLG H +L  G +Y++ F +NIW TT F C+ ++
Subjt:  LIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAGAAAATGATTAGAAACGTGGTTATTTTGTTGCTCATCACGGTGACTTTTGCTCGAGCTCGAGTTGTTACAAGAATTACGTTACCTCCACCGGTACCTACAAC
TTATAACGTTCATGTTGTTAATGGGCTAAGCAACGTCGGGTTGATTGTGCATTGCCAGTCGAAGGACAATGATTTGGGGAGTCACAATTTGCTTAATCGTGGAGATGAAT
ACCAATGGAACTTTAAGGAAAACATTTGGGGAACGACCCTCTTTTGGTGCAGATTTGAGAAGTCGGGTGCCTATTGCACTGCTAGTCGAAGGACGATGATTTGGGAGTTC
ATCATTTGCTTAATCCGGGAGATAATTACAAATTTAACTTTAGGGTTAACTTTTGGAGAACAACCCTCTTTTGGTGCGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAGAAAATGATTAGAAACGTGGTTATTTTGTTGCTCATCACGGTGACTTTTGCTCGAGCTCGAGTTGTTACAAGAATTACGTTACCTCCACCGGTACCTACAAC
TTATAACGTTCATGTTGTTAATGGGCTAAGCAACGTCGGGTTGATTGTGCATTGCCAGTCGAAGGACAATGATTTGGGGAGTCACAATTTGCTTAATCGTGGAGATGAAT
ACCAATGGAACTTTAAGGAAAACATTTGGGGAACGACCCTCTTTTGGTGCAGATTTGAGAAGTCGGGTGCCTATTGCACTGCTAGTCGAAGGACGATGATTTGGGAGTTC
ATCATTTGCTTAATCCGGGAGATAATTACAAATTTAACTTTAGGGTTAACTTTTGGAGAACAACCCTCTTTTGGTGCGAAGTGA
Protein sequenceShow/hide protein sequence
MFKKMIRNVVILLLITVTFARARVVTRITLPPPVPTTYNVHVVNGLSNVGLIVHCQSKDNDLGSHNLLNRGDEYQWNFKENIWGTTLFWCRFEKSGAYCTASRRTMIWEF
IICLIREIITNLTLGLTFGEQPSFGAK