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CmoCh17G012270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G012270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionThylakoid protein sll1769
Genome locationCmo_Chr17:9743835..9746326
RNA-Seq ExpressionCmoCh17G012270
SyntenyCmoCh17G012270
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsIPR040003 - Plastoglobular protein 18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575973.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7997.18Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
        MSSGVASSVS SLFSVVPTKSKITHCSS SLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFF+GKAFAETLTERVESTVGEVL EIGRLQ
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ

Query:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPR
        AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQ SSPNAYSETVVNQDPPR
Subjt:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPR

KAG7014497.1 putative protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]6.8e-8297.24Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
        MSSGVASSVS SLFSVVPTKSKITHCSS SLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFF+GKAFAETLTERVESTVGEVL EIGRLQ
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ

Query:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
        AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVV QDPPRGDEE
Subjt:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE

XP_022953678.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]2.3e-85100Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
        MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ

Query:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
        AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
Subjt:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE

XP_022991713.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima]7.5e-8195.03Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
        MSSGVASSVS SLFSV+PT+SKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFF+GKAFAETLTERVESTVGEVL EIGRLQ
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ

Query:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
        AERQQQIIDFQEEVI+RAKKAKEKAERDAKEAQGPISSSI+SATIEVTSSPT SSNGQQRSS NAYSETVVNQDPPRGDEE
Subjt:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE

XP_023548651.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo]3.4e-8196.13Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
        MSSGVASSVS SLFS VPTKSKITHCSSPSLVRFRSSSTSSNLKFRP+GSLRFIASCSSGDGDNRTVLDAFF+GKAFAETLTERVESTVG VL EIGRLQ
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ

Query:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
        AERQQQIIDFQEEVI+RAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
Subjt:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE

TrEMBL top hitse value%identityAlignment
A0A0A0K6Q2 Uncharacterized protein5.5e-5369.73Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFR------PNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLG
        MSSGV SSVS S FS+V TK KITH S PSL+ FRSSST SNLKFR      PNG  RF+A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVL 
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFR------PNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLG

Query:  EIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGD
         IGRLQAE+Q+QI DFQ+EVI+RAKKAKEKA RD+KE QGP+SSS+IS  IEV SSPT+       SSP+A SE+VVNQDP  G+
Subjt:  EIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGD

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X11.2e-5268.65Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFR------PNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLG
        MSS + SSVS S FS+VPTK KITH SSPSL+ FRSSST SNL+FR      PNGS R +A CSSGDGD+RT+LDAFF+GKA AE LTER+EST+GEVL 
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFR------PNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLG

Query:  EIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGD
         IG+LQAE+Q+QI DFQ+EVI+RAKKAKEKA R+AKE Q P+SSS+IS TIEV+SSPT+       SSP+A SE+ VNQDPP GD
Subjt:  EIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGD

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like1.1e-85100Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
        MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ

Query:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
        AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
Subjt:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like3.6e-8195.03Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
        MSSGVASSVS SLFSV+PT+SKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFF+GKAFAETLTERVESTVGEVL EIGRLQ
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ

Query:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
        AERQQQIIDFQEEVI+RAKKAKEKAERDAKEAQGPISSSI+SATIEVTSSPT SSNGQQRSS NAYSETVVNQDPPRGDEE
Subjt:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE

A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like2.2e-4665.57Show/hide
Query:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ
        M+SGV  SVS S FS++ +K KITH SSPS ++FR  S        P GS RF+  CSSGD D+RTVL+AFF+GKA AE LTERVEST+GEVL  IGRLQ
Subjt:  MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQ

Query:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPI--SSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE
        AE+Q+QI+DFQEEVI+RAKKA+EKA RDAKE QGPI  SSSI S TIEV SS T S+N QQ S+P++ S T  NQDPP GDEE
Subjt:  AERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPI--SSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE

SwissProt top hitse value%identityAlignment
P73628 Thylakoid protein sll17695.4e-0532.63Show/hide
Query:  VLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRS
        VL AFF+G+AFAE L+E+VE  V   L E+G+  AE+++ +  F  EV  RA     +         GP+S+  +  T++   +  AS   + ++
Subjt:  VLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRS

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic1.9e-1841.45Show/hide
Query:  RFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEA
        R RS+S  SN   +            SG+ +N++VLDAFF+GKA AE + ER+ESTVGEVL  IG+ QAE+Q+Q+ + QEEV++RAKKAKE+A R+  E 
Subjt:  RFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEA

Query:  QGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETV---VNQDPPRGDEE
        QG ++S      + +T +P A       S+    S+T+   V +     DE+
Subjt:  QGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETV---VNQDPPRGDEE

Arabidopsis top hitse value%identityAlignment
AT4G13200.1 unknown protein1.3e-1941.45Show/hide
Query:  RFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEA
        R RS+S  SN   +            SG+ +N++VLDAFF+GKA AE + ER+ESTVGEVL  IG+ QAE+Q+Q+ + QEEV++RAKKAKE+A R+  E 
Subjt:  RFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEVIDRAKKAKEKAERDAKEA

Query:  QGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETV---VNQDPPRGDEE
        QG ++S      + +T +P A       S+    S+T+   V +     DE+
Subjt:  QGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETV---VNQDPPRGDEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGCGGGGTTGCATCTTCAGTTTCCTCATCCCTTTTCTCGGTTGTACCCACTAAATCAAAGATTACCCATTGTTCATCTCCCTCTCTCGTTCGATTTCGATCCTC
ATCCACTTCCTCAAATCTCAAATTTCGACCGAATGGGTCTCTCAGATTCATAGCCAGTTGCAGCTCCGGCGATGGTGACAACAGGACTGTTCTAGATGCCTTTTTCATAG
GAAAAGCTTTTGCAGAAACCTTAACTGAGCGTGTCGAGTCAACTGTTGGAGAGGTTTTGGGTGAGATTGGTAGGCTGCAAGCTGAACGACAACAACAAATTATTGATTTC
CAGGAGGAGGTTATAGACAGAGCTAAAAAGGCCAAGGAAAAAGCAGAACGTGATGCCAAAGAAGCACAAGGACCCATCTCCTCTTCGATAATATCGGCTACGATCGAAGT
TACTTCTTCTCCAACTGCTTCGAGCAATGGACAACAACGCTCAAGTCCGAACGCATATTCAGAAACTGTGGTGAATCAAGATCCTCCTCGTGGTGATGAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
AGGAAAGCGGCAATTGGGCATGTCGAACAAGGAATGAGCAAGAACAGGGAGGGTTCTGGGTCACTGTCATTTCATTTCCCCGCCAAAGATCTTTCCTTATAGATTCCTGG
TTGGCTGTCGAGAAACTCAGAGAGAAACGTTGAGAAAGTGCGCCGGGTAATTTTCCATTCCGTCGCACAAAATGAGTAGCGGGGTTGCATCTTCAGTTTCCTCATCCCTT
TTCTCGGTTGTACCCACTAAATCAAAGATTACCCATTGTTCATCTCCCTCTCTCGTTCGATTTCGATCCTCATCCACTTCCTCAAATCTCAAATTTCGACCGAATGGGTC
TCTCAGATTCATAGCCAGTTGCAGCTCCGGCGATGGTGACAACAGGACTGTTCTAGATGCCTTTTTCATAGGAAAAGCTTTTGCAGAAACCTTAACTGAGCGTGTCGAGT
CAACTGTTGGAGAGGTTTTGGGTGAGATTGGTAGGCTGCAAGCTGAACGACAACAACAAATTATTGATTTCCAGGAGGAGGTTATAGACAGAGCTAAAAAGGCCAAGGAA
AAAGCAGAACGTGATGCCAAAGAAGCACAAGGACCCATCTCCTCTTCGATAATATCGGCTACGATCGAAGTTACTTCTTCTCCAACTGCTTCGAGCAATGGACAACAACG
CTCAAGTCCGAACGCATATTCAGAAACTGTGGTGAATCAAGATCCTCCTCGTGGTGATGAAGAGTAA
Protein sequenceShow/hide protein sequence
MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDF
QEEVIDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE