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CmoCh17G012670 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G012670
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S11
Genome locationCmo_Chr17:9963297..9964160
RNA-Seq ExpressionCmoCh17G012670
SyntenyCmoCh17G012670
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3946461.1 hypothetical protein CMV_027276 [Castanea mollissima]3.4e-0961.67Show/hide
Query:  NFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYS
        NFL+L  YLWIQ  K RDT+  +N  RKCYS  S SRYAT+RSHDK   S+ RCS+K YS
Subjt:  NFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYS

KAG7014534.1 30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1054.37Show/hide
Query:  MKKEKLRVEVFVLCETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYSDTDKKKIKKKI--KKKGSK
        MKKEKLRVEVFVLCETDDGS NFLIL  YLWIQRSKNRDTI RSN         +  R   N+   +     K  S+    D   + I+ +I  +KKGSK
Subjt:  MKKEKLRVEVFVLCETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYSDTDKKKIKKKI--KKKGSK

Query:  VIA
        VIA
Subjt:  VIA

KAG9139838.1 hypothetical protein Leryth_026844 [Lithospermum erythrorhizon]1.6e-0664.15Show/hide
Query:  YLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYS
        Y WIQ  K  D +  SN   KCYS SSRSRYAT+RSHDK  WSRKR S+ SYS
Subjt:  YLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYS

KYP36697.1 hypothetical protein KK1_042161, partial [Cajanus cajan]2.9e-0855.84Show/hide
Query:  NFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYSDTDKKKIKKKIKKKGSK
        NFL+L  YLWIQ     D   RSN  RK YS S+RSR AT+RSHDK SWSRKRC +K YS   KK    K ++K  K
Subjt:  NFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYSDTDKKKIKKKIKKKGSK

MBA0771669.1 hypothetical protein [Gossypium trilobum]1.8e-0554.1Show/hide
Query:  CETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKR
        C    GS+N L+LH +LWIQ  K RD     N   KCYS S R RYA NRS+DKG   RKR
Subjt:  CETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKR

TrEMBL top hitse value%identityAlignment
A0A151R2A2 Uncharacterized protein (Fragment)1.4e-0855.84Show/hide
Query:  NFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYSDTDKKKIKKKIKKKGSK
        NFL+L  YLWIQ     D   RSN  RK YS S+RSR AT+RSHDK SWSRKRC +K YS   KK    K ++K  K
Subjt:  NFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYSDTDKKKIKKKIKKKGSK

A0A1R3KVA2 Ribosomal protein S114.3e-0561.11Show/hide
Query:  GYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYS
        G   IQ  K RD+   SN   KCYS  SR RYAT+RS+DKGSWSRKR S  SYS
Subjt:  GYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYS

A0A699UYW6 30S ribosomal protein S11, chloroplastic (Fragment)4.3e-0550.77Show/hide
Query:  VEVFVLCETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSR
        ++V V      GS   L L  YLWI   K RDTIY SN   K YS SS +RYA +RS++KG+WSR
Subjt:  VEVFVLCETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSR

A0A7J9EF66 Uncharacterized protein1.1e-0555.17Show/hide
Query:  CETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWS
        C    GS+N L+LH +LWIQ  K RD     N   KCYS S R RYA NRS+DKGS S
Subjt:  CETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWS

A0A7J9EF69 Uncharacterized protein8.6e-0654.1Show/hide
Query:  CETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKR
        C    GS+N L+LH +LWIQ  K RD     N   KCYS S R RYA NRS+DKG   RKR
Subjt:  CETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGGTCGGATAATTTCTTGATCCTCCACGGGTACTTGTGGATTCAAAGGTCCAAGAA
TAGGGACACCATTTACCGCTCAAATCCGCGCAGGAAATGCTATTCGGGCTCTAGCAGATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGA
GATGCAGTGTTAAGAGCTATTCAGACACAGATAAAAAAAAAATTAAAAAAAAAATTAAAAAAAAAGGGTCAAAAGTGATAGCGGTTAGGATACTATATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGGTCGGATAATTTCTTGATCCTCCACGGGTACTTGTGGATTCAAAGGTCCAAGAA
TAGGGACACCATTTACCGCTCAAATCCGCGCAGGAAATGCTATTCGGGCTCTAGCAGATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTGGTCTCGGAAGA
GATGCAGTGTTAAGAGCTATTCAGACACAGATAAAAAAAAAATTAAAAAAAAAATTAAAAAAAAAGGGTCAAAAGTGATAGCGGTTAGGATACTATATTAA
Protein sequenceShow/hide protein sequence
MKKEKLRVEVFVLCETDDGSDNFLILHGYLWIQRSKNRDTIYRSNPRRKCYSGSSRSRYATNRSHDKGSWSRKRCSVKSYSDTDKKKIKKKIKKKGSKVIAVRILY