CuGenDBv2

Gene ID	CmoCh17G012700
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Genome location	Cmo_Chr17:9975197..9976555
RNA-Seq Expression	CmoCh17G012700
Synteny	CmoCh17G012700
Gene Ontology terms	GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR001750 - NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit IPR003918 - NADH:ubiquinone oxidoreductase

Homology

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GenBank top hits

e value

%identity

Alignment

QIT05787.1 NADH dehydrogenase subunit D [Gynostemma burmanicum (nom. inval.)]

4.5e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

YP_009236327.1 NADH-plastoquinone oxidoreductase subunit 4 [Gynostemma pentaphyllum]

4.5e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

YP_009440029.1 NADH dehydrogenase subunit 4 [Gynostemma pentagynum]

4.5e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

YP_009440208.1 NADH dehydrogenase subunit 4 [Gynostemma longipes]

4.5e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

YP_010015190.1 NADH dehydrogenase subunit 4 [Gynostemma yixingense]

4.5e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

TrEMBL top hits

e value

%identity

Alignment

A0A109X092 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.2e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

A0A191T4C1 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.2e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

A0A286QM65 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.2e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

A0A291IB50 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.2e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

A0A2L0WR21 NADH dehydrogenase subunit 4

2.2e-28

95.52

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGVMGIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

SwissProt top hits

e value

%identity

Alignment

A0ZZ85 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

3.2e-29

89.55

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LL+GV+G+GLYGSNEPTLNFET ANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

Q0ZIW8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

6.5e-30

91.04

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LL+GV+GIGLYGSNEPTLNFETSANQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

Q2L955 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

3.2e-29

89.55

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LL+GV+G+GLYGSNEPTLNFET ANQSYP+ALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

Q4VZL8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.3e-30

94.03

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGV+GIGLYGSNEPTLNFETSANQSYPIALEI+FYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

Q68RV6 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.1e-29

89.55

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LLMGV+G+GLYGSNEPTLNFETS NQSYP+ALEIIFYIGF IAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

Arabidopsis top hits

e value

%identity

Alignment

ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein

1.8e-27

82.09

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Query:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        S  LL+GV+GI LYGSNEPTLN E  AN+SYP+ LEI+FYIGFLIAFAVKSPIIPLHTWLPDTHGEA
Subjt:  SFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

ATMG00580.1 NADH dehydrogenase subunit 4

2.8e-04

35.42

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Query:  TLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA
        T + + S    +    +I  +I    +FAVK P++P+H WLP+ H EA
Subjt:  TLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA

Sequences

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CDS sequence

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ATGTACAGAGCAAGTTTATTTTGTACCCTGCGGGAGGTTTCATTTCTTTTGTTAATGGGAGTTATGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGA
AACATCGGCTAATCAATCGTATCCTATAGCACTGGAAATAATATTCTATATCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTAC
CAGATACCCACGGAGAGGCACGTGTATGCTTCTAG

mRNA sequence

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Protein sequence

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MYRASLFCTLREVSFLLLMGVMGIGLYGSNEPTLNFETSANQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEARVCF

CmoCh17G012700 (gene) of Cucurbita moschata (Rifu) v1 genome