; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G013250 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G013250
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionVacuolar sorting-associated protein 62
Genome locationCmo_Chr17:10404627..10407049
RNA-Seq ExpressionCmoCh17G013250
SyntenyCmoCh17G013250
Gene Ontology termsNA
InterPro domainsIPR014807 - Cytochrome c oxidase assembly factor 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014597.1 hypothetical protein SDJN02_24776 [Cucurbita argyrosperma subsp. argyrosperma]7.6e-10096.41Show/hide
Query:  MLAKRLLSIFKRSPTPNAS----SSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASL
        MLAKRLLSIFKRSPTPNAS    SSSVRPSEEGVNKSWGR AVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNN+AIIDAIGEPIVKGPWYNASL
Subjt:  MLAKRLLSIFKRSPTPNAS----SSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASL

Query:  AVAHKRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        AVAHKRHSLSCTFPVSGPQGTGIVQLKAVRNGE+SWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
Subjt:  AVAHKRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

XP_022954302.1 uncharacterized protein LOC111456591 isoform X1 [Cucurbita moschata]5.7e-103100Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

XP_022954303.1 uncharacterized protein LOC111456591 isoform X2 [Cucurbita moschata]4.1e-10199.48Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKRLLSIFKRSPTPNA SSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

XP_022991411.1 uncharacterized protein LOC111488050 isoform X1 [Cucurbita maxima]7.6e-10096.86Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKR LSIFKRSPTPNASSSSVRPSEEGVNKSWGR AVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGIVQLKAVRNGE+SWISFLRPRDWDILIMDALLHVPENEGKQQT+RINLTEKFAPAAA CVACTDCQSP AEKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

XP_023547892.1 uncharacterized protein LOC111806704 isoform X1 [Cucurbita pepo subsp. pepo]1.0e-9997.4Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKR LSIFKRSPTPNASSSSVRPSEEGVNKSWGR AVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAP-AAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGIVQLKAVRNGE+SWISFLRPRDWDILIMDALLHVPENEGKQQT+RINLTEKFAP AAAACVACTDCQSPEAEKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAP-AAAACVACTDCQSPEAEKR

TrEMBL top hitse value%identityAlignment
A0A0A0KF26 Uncharacterized protein3.2e-8884.82Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKR  SIFKRS TP+ASS+S++P+E  VNKSWGR AVSFVL+TVTGGVALSALDDLAIYHSCSSKAIEK +NN+A+IDAIGEPI KGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGI+QLKAVRNGE+SWISFLRPRDWDIL+MDALL+VPENEGKQ+T+RINL+EKFAP  AACV+CTDCQ PE EKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

A0A6J1GQN1 uncharacterized protein LOC111456591 isoform X12.7e-103100Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

A0A6J1GQQ6 uncharacterized protein LOC111456591 isoform X22.0e-10199.48Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKRLLSIFKRSPTPNA SSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

A0A6J1JLR1 uncharacterized protein LOC111488050 isoform X22.7e-9896.34Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKR LSIFKRSPTPNA SSSVRPSEEGVNKSWGR AVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGIVQLKAVRNGE+SWISFLRPRDWDILIMDALLHVPENEGKQQT+RINLTEKFAPAAA CVACTDCQSP AEKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

A0A6J1JQM9 uncharacterized protein LOC111488050 isoform X13.7e-10096.86Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        MLAKR LSIFKRSPTPNASSSSVRPSEEGVNKSWGR AVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR
        KRHSLSCTFPVSGPQGTGIVQLKAVRNGE+SWISFLRPRDWDILIMDALLHVPENEGKQQT+RINLTEKFAPAAA CVACTDCQSP AEKR
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G20390.1 unknown protein6.3e-6065.32Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        M A+R  S FK S T +   ++      G   S+GR AVSFVL+TVTGGVALSALDDL+IY  CSSKA+EK  N+K +I+AIGEPI KGPWYNASLAV+H
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPA
        +RHS+SC+FPV GPQGTGI+ LKAVRNGE+S   FL+ RDWDILIMDAL+HVP NEG QQT+RIN+T+   P+
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPA

AT2G20390.2 unknown protein1.8e-5454.07Show/hide
Query:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH
        M A+R  S FK S T +   ++      G   S+GR AVSFVL+TVTGGVALSALDDL+IY  CSSKA+EK  N+K +I+AIGEPI KGPWYNASLAV+H
Subjt:  MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGIVQLKAVRNG------------------------------------EESWISFLRPRDWDILIMDALLHVPENEGKQQTMRI
        +RHS+SC+FPV GPQGTGI+ LKAVRNG                                    E+S   FL+ RDWDILIMDAL+HVP NEG QQT+RI
Subjt:  KRHSLSCTFPVSGPQGTGIVQLKAVRNG------------------------------------EESWISFLRPRDWDILIMDALLHVPENEGKQQTMRI

Query:  NLTEKFAPA
        N+T+   P+
Subjt:  NLTEKFAPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGCGAAGAGGTTGCTTTCCATATTCAAGCGCTCTCCAACTCCGAACGCTTCCAGCAGTTCCGTAAGGCCATCGGAGGAAGGGGTGAATAAATCCTGGGGTCGCAA
TGCAGTCTCCTTTGTACTTGTTACTGTTACTGGTGGTGTAGCCTTGAGTGCTTTAGATGACCTCGCCATTTATCATAGCTGTAGCAGCAAAGCCATAGAGAAAGCCAAGA
ACAATAAAGCAATTATAGATGCTATTGGAGAACCCATTGTTAAAGGTCCATGGTACAATGCATCACTTGCAGTAGCTCATAAGAGACATTCTCTATCCTGCACGTTTCCG
GTATCAGGACCCCAAGGCACGGGGATCGTCCAACTGAAGGCAGTTCGTAATGGAGAGGAATCCTGGATATCATTTCTCCGGCCACGAGACTGGGACATCCTGATCATGGA
TGCTCTCCTACATGTTCCCGAAAACGAAGGTAAGCAGCAAACAATGCGTATTAATCTCACTGAGAAGTTTGCCCCTGCTGCTGCTGCTTGTGTCGCATGCACTGATTGTC
AGTCTCCGGAGGCAGAGAAGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGCGAAGAGGTTGCTTTCCATATTCAAGCGCTCTCCAACTCCGAACGCTTCCAGCAGTTCCGTAAGGCCATCGGAGGAAGGGGTGAATAAATCCTGGGGTCGCAA
TGCAGTCTCCTTTGTACTTGTTACTGTTACTGGTGGTGTAGCCTTGAGTGCTTTAGATGACCTCGCCATTTATCATAGCTGTAGCAGCAAAGCCATAGAGAAAGCCAAGA
ACAATAAAGCAATTATAGATGCTATTGGAGAACCCATTGTTAAAGGTCCATGGTACAATGCATCACTTGCAGTAGCTCATAAGAGACATTCTCTATCCTGCACGTTTCCG
GTATCAGGACCCCAAGGCACGGGGATCGTCCAACTGAAGGCAGTTCGTAATGGAGAGGAATCCTGGATATCATTTCTCCGGCCACGAGACTGGGACATCCTGATCATGGA
TGCTCTCCTACATGTTCCCGAAAACGAAGGTAAGCAGCAAACAATGCGTATTAATCTCACTGAGAAGTTTGCCCCTGCTGCTGCTGCTTGTGTCGCATGCACTGATTGTC
AGTCTCCGGAGGCAGAGAAGAGATGA
Protein sequenceShow/hide protein sequence
MLAKRLLSIFKRSPTPNASSSSVRPSEEGVNKSWGRNAVSFVLVTVTGGVALSALDDLAIYHSCSSKAIEKAKNNKAIIDAIGEPIVKGPWYNASLAVAHKRHSLSCTFP
VSGPQGTGIVQLKAVRNGEESWISFLRPRDWDILIMDALLHVPENEGKQQTMRINLTEKFAPAAAACVACTDCQSPEAEKR