; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G013440 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G013440
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S27
Genome locationCmo_Chr17:10500280..10501095
RNA-Seq ExpressionCmoCh17G013440
SyntenyCmoCh17G013440
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB94378.1 40S ribosomal protein S27-2 [Morus notabilis]1.0e-4271.97Show/hide
Query:  PRRRSAPVSLHSSYRPVSLANS--RWDFRVRDPDGCFLIIM------VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
        PRRR    S HS+ R  +  ++   W      P     I        VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
Subjt:  PRRRSAPVSLHSSYRPVSLANS--RWDFRVRDPDGCFLIIM------VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT

Query:  VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

KAF5449188.1 hypothetical protein F2P56_029664, partial [Juglans regia]3.6e-4397.78Show/hide
Query:  FLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        FL  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  FLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

KAG6592828.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia]3.6e-4394.62Show/hide
Query:  DGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        D   LI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  DGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

XP_022953224.1 uncharacterized protein LOC111455834 [Cucurbita moschata]3.1e-71100Show/hide
Query:  FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
        FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
Subjt:  FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT

Query:  VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

XP_022991567.1 40S ribosomal protein S27-2-like [Cucurbita maxima]1.4e-7198.51Show/hide
Query:  GRFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
        GRFQPLLYI PRRRS+PVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
Subjt:  GRFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS

Query:  QTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        QTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  QTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A0A0K9G0 40S ribosomal protein S278.0e-4977.61Show/hide
Query:  PLLYIRPRRRSAPVSLHSSYRPVSLANSR----WDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
        PLLYI PRRRS+P+S  SS+R   + +        F +       LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
Subjt:  PLLYIRPRRRSAPVSLHSSYRPVSLANSR----WDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS

Query:  QTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        QTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  QTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

A0A6J1GP15 40S ribosomal protein S271.5e-71100Show/hide
Query:  FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
        FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
Subjt:  FQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT

Query:  VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

A0A6J1JM72 40S ribosomal protein S276.8e-7298.51Show/hide
Query:  GRFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
        GRFQPLLYI PRRRS+PVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
Subjt:  GRFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS

Query:  QTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        QTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  QTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

A0A6J1JTM3 40S ribosomal protein S271.1e-42100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

W9RJV2 40S ribosomal protein S275.0e-4371.97Show/hide
Query:  PRRRSAPVSLHSSYRPVSLANS--RWDFRVRDPDGCFLIIM------VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
        PRRR    S HS+ R  +  ++   W      P     I        VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
Subjt:  PRRRSAPVSLHSSYRPVSLANS--RWDFRVRDPDGCFLIIM------VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT

Query:  VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  VVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-12.0e-4192.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

P47903 40S ribosomal protein S275.2e-3784.88Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   RLTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-32.7e-4194.05Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

Q96564 40S ribosomal protein S279.2e-4294.19Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGG+ARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-22.0e-4496.51Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein1.5e-4292.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

AT3G61110.1 ribosomal protein S271.4e-4596.51Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein9.1e-3781.4Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+A+LT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein1.9e-4294.05Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGACGTTTCCAGCCGCTCCTTTATATTCGTCCTAGACGGCGCTCTGCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGA
TTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAACTCGAGAAGAGAAAACACAAGCTCA
AGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAGGGTTGCTTTAACATAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAAT
TGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTCAGAAGAAAGGGCGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGACGTTTCCAGCCGCTCCTTTATATTCGTCCTAGACGGCGCTCTGCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGA
TTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAACTCGAGAAGAGAAAACACAAGCTCA
AGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAGGGTTGCTTTAACATAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAAT
TGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTCAGAAGAAAGGGCGACTAA
Protein sequenceShow/hide protein sequence
MNGRFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
CQTVLCQPTGGRARLTEGCSFRRKGD