CuGenDBv2

Gene ID	CmoCh17G013530
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	light-regulated protein-like
Genome location	Cmo_Chr17:10532341..10532946
RNA-Seq Expression	CmoCh17G013530
Synteny	CmoCh17G013530
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR009856 - Light regulated Lir1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6576101.1 Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-67

89.4

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMS              SVFPAEACETVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPE
        MYPEVKLKPEAK GGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDP+
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPE

XP_022953556.1 light-regulated protein-like [Cucurbita moschata]

1.9e-72

91.08

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMS              SVFPAEACETVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_022991991.1 light-regulated protein, chloroplastic-like [Cucurbita maxima]

7.2e-72

89.81

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAAPSLAHPSSCYLLPPTTKLMAFS+PSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSS+S              SVFPAEACETVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_023547464.1 light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]

2.7e-71

89.81

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRS RRHPTSQTHRPILKAKASAVGQDPSTVDYSS+S              SVFPAEACETVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_038906788.1 light-regulated protein, chloroplastic-like [Benincasa hispida]

2.0e-61

80.89

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAA S+A PSSC LLPPT K MAFS+ SRS+ RHPTSQT RPILKAKASAVGQDPSTVDYSS+S              SVFPAEAC+TVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKK GSV+E VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CBQ8 light-regulated protein-like

1.1e-52

74.52

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAA S+A P SC LLPPT KLMAFSI +RS+ R       +  LKAKASAVGQ+PSTVDYSSMS              SVFPAEAC+TVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKKG SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A5D3DLY7 Light-regulated protein-like

8.1e-53

74.52

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAA S+A P SC LLPPT KLMAFSI +RS+ R       +  LKAKASAVGQ+PSTVDYSSMS              SVFPAEAC+TVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKKG SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1GNA5 light-regulated protein-like

9.2e-73

91.08

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMS              SVFPAEACETVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1JSC1 light-regulated protein, chloroplastic-like

3.5e-72

89.81

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQLQAAPSLAHPSSCYLLPPTTKLMAFS+PSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSS+S              SVFPAEACETVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Q39636 CR9 protein

1.6e-53

75.16

Show/hide

Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE
        MQ QAA S+A P SC LLPPT K MAFSIP+RSM R       +  LKAKASAVGQDPSTVDYSSMS              SVFPAEAC+TVGGEACDVE
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVE

Query:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        MYPEVKLKPEAKKG SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  MYPEVKLKPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

SwissProt top hits

e value

%identity

Alignment

Q03200 Light-regulated protein, chloroplastic

7.9e-21

51.92

Show/hide

Query:  LKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGS--VSEAVDREYLQYDSPKTVFPAEACDDLG
        ++A A+AV  + + VDYSS                SVFP EAC+ +GGEAC+V+MYPE KL   A    S   +E VDR+YL YD P TVFP EACDDLG
Subjt:  LKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGS--VSEAVDREYLQYDSPKTVFPAEACDDLG

Query:  GEFC
        GEFC
Subjt:  GEFC

Q96500 Light-regulated protein 1, chloroplastic

1.5e-24

45.58

Show/hide

Query:  SLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVEMYPEVKL
        S++ P   +LLP  TK    S    S+R + +S          +S++  DP+TVDY+S          S+L   SVFPAEACE + G AC  ++YPEVKL
Subjt:  SLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVEMYPEVKL

Query:  KPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
          +       SE VDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  KPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G26740.1 CCR-like

1.1e-25

45.58

Show/hide

Query:  SLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVEMYPEVKL
        S++ P   +LLP  TK    S    S+R + +S          +S++  DP+TVDY+S          S+L   SVFPAEACE + G AC  ++YPEVKL
Subjt:  SLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVEMYPEVKL

Query:  KPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
          +       SE VDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  KPEAKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGTTGCAGGCAGCTCCTTCCCTGGCACATCCATCTTCATGCTACCTTCTCCCACCAACTACCAAATTGATGGCGTTCTCAATCCCATCTAGGTCCATGCGAAGGCA
CCCCACCTCACAAACTCATCGCCCCATCCTAAAAGCGAAGGCAAGTGCGGTTGGACAAGACCCTTCAACGGTTGACTACAGCTCCATGTCCTCATTCAATACCTTCATTT
GCCCTTCTGTGTTGGTTTTTGGAAGTGTTTTTCCAGCAGAGGCTTGTGAAACTGTTGGAGGTGAAGCTTGTGATGTCGAAATGTATCCTGAAGTAAAGCTAAAACCAGAG
GCTAAAAAGGGAGGCAGTGTTTCAGAGGCAGTTGATAGAGAGTATCTACAATATGACAGTCCTAAGACAGTCTTTCCTGCGGAGGCTTGTGATGATCTGGGTGGTGAATT
CTGTGATCCAGAGTATCAAAAGGGAGTTTACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSFNTFICPSVLVFGSVFPAEACETVGGEACDVEMYPEVKLKPE
AKKGGSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

CmoCh17G013530 (gene) of Cucurbita moschata (Rifu) v1 genome