CuGenDBv2

Gene ID	CmoCh17G013590
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	LITAF domain-containing protein
Genome location	Cmo_Chr17:10570933..10572668
RNA-Seq Expression	CmoCh17G013590
Synteny	CmoCh17G013590
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]

2.5e-66

83.45

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT+I            RSKISLAAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        PSMDCLWHKYHYCPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

4.7e-65

82.07

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Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+I            RSKIS AAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        PSMDCLWHKYHYCPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

XP_008459901.1 PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]

9.4e-66

82.76

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Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKN EPVVG+P YVGNN YQAGQIPPN IFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT+I            RSKISLAAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        PSMDCLWHKYHYCPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

XP_022954275.1 GSH-induced LITAF domain protein [Cucurbita moschata]

5.0e-75

91.78

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Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSI            RSKISLAAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]

3.2e-74

90.41

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Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKNDEPVVGIPFYVGNN+YQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSI            RSKISLAAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        PSMDCLWHKYHYCPSCKEKVGDFEKSD CAVMDPPHWTQPSFALPA
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

2.3e-65

82.07

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+I            RSKIS AAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        PSMDCLWHKYHYCPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

A0A1S3CCH3 uncharacterized protein LOC103498881

4.6e-66

82.76

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Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKN EPVVG+P YVGNN YQAGQIPPN IFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT+I            RSKISLAAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        PSMDCLWHKYHYCPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

1.2e-66

83.45

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Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT+I            RSKISLAAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        PSMDCLWHKYHYCPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

A0A6J1GS01 GSH-induced LITAF domain protein

2.4e-75

91.78

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Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSI            RSKISLAAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

A0A6J1JVN9 GSH-induced LITAF domain protein

1.6e-74

90.41

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Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        MSKNDEPVVGIPFYVGNN+YQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSI            RSKISLAAVVGCMMPFMLGVCFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        PSMDCLWHKYHYCPSCKEKVGDFEKSD CAVMDPPHWTQPSFALPA
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

3.3e-53

63.7

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        M+K    V+G+P+Y G N YQAG +PPNAI+G P G PI QT+YRDTPAP+ C+YCGN+GLT++            RSK  +AAVV CMMPFMLG CFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        PSMDCLW+K H+CP C  KV DFEKSD C VMDPP W QPSFALPA
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

2.3e-54

63.7

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC
        M+K    V+G+P+Y G N YQAG +PPNAI+G P G PI QT+YRDTPAP+ C+YCGN+GLT++            RSK  +AAVV CMMPFMLG CFLC
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLC

Query:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        PSMDCLW+K H+CP C  KV DFEKSD C VMDPP W QPSFALPA
Subjt:  PSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGCAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATCTTTGGCCATCCCCAGGGAGT
TCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGGTTCCTTTTCTACCTTCTCTCTATCT
CTGCGTCTAGATCGAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTAT
CACTATTGTCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTG
A

mRNA sequence

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Protein sequence

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MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRFLFYLLSISASRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKY
HYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

CmoCh17G013590 (gene) of Cucurbita moschata (Rifu) v1 genome