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CmoCh17G013780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G013780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMADS-box transcription factor 8-like
Genome locationCmo_Chr17:10700561..10701041
RNA-Seq ExpressionCmoCh17G013780
SyntenyCmoCh17G013780
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576135.1 Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia]2.1e-2698.39Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNR
        MGRKKIEVKRIED CNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNR
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNR

KAG6592961.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2593.55Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNR
        MGRKKIE+KRIEDMCNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG+R
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNR

KAG7014654.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-3298.59Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKIDGV
        MGRKKIEVKRIED CNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKIDGV
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKIDGV

XP_023004227.1 MADS-box protein 04g005320-like [Cucurbita maxima]3.0e-2595.08Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGRKKIE+KRIEDMCNRHVTFCKRR+GLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG+
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

XP_023514717.1 MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo]7.9e-2698.36Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGRKKIEVKRIED CNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

TrEMBL top hitse value%identityAlignment
A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X11.6e-2491.8Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X31.6e-2491.8Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X21.6e-2491.8Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like1.9e-2593.44Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGRKKIE+KRIEDMCNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG+
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

A0A6J1KPU7 MADS-box protein 04g005320-like1.5e-2595.08Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGRKKIE+KRIEDMCNRHVTFCKRR+GLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG+
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

SwissProt top hitse value%identityAlignment
O04067 Agamous-like MADS-box protein AGL9 homolog2.8e-1868.85Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS +
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

P29383 Agamous-like MADS-box protein AGL34.4e-1963.77Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKID
        MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS      R +D
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKID

Q03489 Agamous-like MADS-box protein AGL9 homolog2.8e-1868.85Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS +
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

Q38836 Agamous-like MADS-box protein AGL112.2e-1868.85Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGR KIE+KRIE+  NR VTFCKRR GL+KKA ELSVLCD EV L++F+ RGRLYE+ + N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

Q9SAR1 MADS-box transcription factor 87.4e-1971.67Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG
        MGR ++E+KRIE+  NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCSG
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG

Arabidopsis top hitse value%identityAlignment
AT2G03710.1 K-box region and MADS-box transcription factor family protein3.1e-2063.77Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKID
        MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS      R +D
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKID

AT2G03710.2 K-box region and MADS-box transcription factor family protein3.1e-2063.77Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKID
        MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS      R +D
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKID

AT2G03710.3 K-box region and MADS-box transcription factor family protein3.1e-2063.77Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKID
        MGR K+E+KRIE+  NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS      R +D
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKID

AT4G09960.1 K-box region and MADS-box transcription factor family protein1.5e-1968.85Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGR KIE+KRIE+  NR VTFCKRR GL+KKA ELSVLCD EV L++F+ RGRLYE+ + N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN

AT4G09960.2 K-box region and MADS-box transcription factor family protein1.5e-1968.85Show/hide
Query:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN
        MGR KIE+KRIE+  NR VTFCKRR GL+KKA ELSVLCD EV L++F+ RGRLYE+ + N
Subjt:  MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATATGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGAGCTGGATTGATAAAGAAGGCCCGAGAGCTCTCTGT
TCTGTGCGACGTTGAAGTCGGACTTGTCATCTTCACCAACCGCGGCCGCCTCTATGAGTTTTGCAGCGGAAACAGAGAACCTCTTAGGAAAATCGATGGGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATATGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGAGCTGGATTGATAAAGAAGGCCCGAGAGCTCTCTGT
TCTGTGCGACGTTGAAGTCGGACTTGTCATCTTCACCAACCGCGGCCGCCTCTATGAGTTTTGCAGCGGAAACAGAGAACCTCTTAGGAAAATCGATGGGGTTTAG
Protein sequenceShow/hide protein sequence
MGRKKIEVKRIEDMCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKIDGV