; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh18G001200 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G001200
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-H2 finger protein ATL48-like
Genome locationCmo_Chr18:840999..842941
RNA-Seq ExpressionCmoCh18G001200
SyntenyCmoCh18G001200
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573043.1 RING-H2 finger protein ATL48, partial [Cucurbita argyrosperma subsp. sororia]2.6e-37100Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

KAG7012232.1 RING-H2 finger protein ATL48 [Cucurbita argyrosperma subsp. argyrosperma]7.5e-3798.78Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVV QGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]3.5e-66100Show/hide
Query:  EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLG
        EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLG
Subjt:  EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLG

Query:  QMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        QMLMRARVVVQGATVALMVGTAFYYGENPWRPS
Subjt:  QMLMRARVVVQGATVALMVGTAFYYGENPWRPS

XP_022994684.1 RING-H2 finger protein ATL48-like [Cucurbita maxima]1.1e-3597.56Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        MSSGE NLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]6.4e-3696.34Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        MSSGEPNLDEFFVEKKRARNPLVP+GA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYG+NPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein8.4e-3491.46Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWR S
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

A0A1S3AVM7 RING-H2 finger protein ATL481.1e-3391.46Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

A0A5A7UHA1 RING-H2 finger protein ATL481.1e-3391.46Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like1.7e-66100Show/hide
Query:  EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLG
        EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLG
Subjt:  EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLG

Query:  QMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        QMLMRARVVVQGATVALMVGTAFYYGENPWRPS
Subjt:  QMLMRARVVVQGATVALMVGTAFYYGENPWRPS

A0A6J1K3J5 RING-H2 finger protein ATL48-like5.2e-3697.56Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
        MSSGE NLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B1.3e-0742.31Show/hide
Query:  FTGMSSGEPNLDEFFVEK---KRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA
        F G+S    +  E F EK   K   NP+VP+G   TA VLT GL  F QGNSQ  +++M  ++  QG T+ A+++G A
Subjt:  FTGMSSGEPNLDEFFVEK---KRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial3.2e-0643.1Show/hide
Query:  PLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENP
        PLVP+G   T G L     + R GN +    +  ARV  QG TVA ++G A YYG++P
Subjt:  PLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENP

Q7X843 RING-H2 finger protein ATL481.4e-3078.75Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GA +TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGT +YYG+NPW+
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial9.0e-0952.38Show/hide
Query:  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA
        E FV K R  NP+VP+G   TA  LT GL SF +GNSQ  Q++MR R+  QG TV A+++G A
Subjt:  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A8.4e-0742.86Show/hide
Query:  SGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGAT-VALMVGTA
        S      E F+ K R  NP+VP+G   TA  LT GL  F +G S   Q++MR R+  QG T VA+++G A
Subjt:  SGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein1.0e-3178.75Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GA +TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGT +YYG+NPW+
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGATGTTTGGCCACGTCACCTTCCTCCGAGATGCATGCTATAATTTCTATCAATTCACAAGAGGAGGAAGACAAAGGCCACGGCGTCTACCTCTTTCTTTCCAA
ACCAATTCTTCCTGAGTCGGTGGCTTTTAATCCTCTGCGTTTATTGTTCTTGATTCAGATTCTCCTCCCTTCCCGCGTCGTTCTGTTAGAAACGGCATCGCGATTCACAG
GTATGAGCTCAGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCGTCGGTGCATTTGTAACTGCTGGAGTTCTCACTGCT
GGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTA
CTATGGCGAGAATCCCTGGCGGCCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGATGTTTGGCCACGTCACCTTCCTCCGAGATGCATGCTATAATTTCTATCAATTCACAAGAGGAGGAAGACAAAGGCCACGGCGTCTACCTCTTTCTTTCCAA
ACCAATTCTTCCTGAGTCGGTGGCTTTTAATCCTCTGCGTTTATTGTTCTTGATTCAGATTCTCCTCCCTTCCCGCGTCGTTCTGTTAGAAACGGCATCGCGATTCACAG
GTATGAGCTCAGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCGTCGGTGCATTTGTAACTGCTGGAGTTCTCACTGCT
GGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTA
CTATGGCGAGAATCCCTGGCGGCCGAGTTAATATGTCAATGTTCTTTTTATGATTTGCTTTTCAGGATCTTGTTTTACGTCGAGAGATTTCGGTAACATTGAAAGATTGT
TGTCTTTCAATCTTTCTTCAAATATAACAACAGGTCATTCGGTGATTTGATGACAATATTTATGTTATGTATTCATTCCTAGGGCATAGATGAGTTGCCTTCAAAGATAT
AAATCTTGGTGTTATGTTGGAATATTGAAATTATAAGAGAAAATCATTGGGTATATTCTCAATATCTTCATCTTATTTTGATGAGCGTCCATATATTATATATATGCTTC
TGTTGTCTACACGAG
Protein sequenceShow/hide protein sequence
MRGCLATSPSSEMHAIISINSQEEEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTA
GLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS