; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh18G001900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G001900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S21, chloroplastic-like
Genome locationCmo_Chr18:1287343..1289958
RNA-Seq ExpressionCmoCh18G001900
SyntenyCmoCh18G001900
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21
IPR038380 - Ribosomal protein S21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573106.1 30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7983.02Show/hide
Query:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
        MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
Subjt:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSSI-LLLMLFNAGR--------------------
        CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQE TRRKDMDEGDDNWEFYQ+ L S++ L   + N G+                    
Subjt:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSSI-LLLMLFNAGR--------------------

Query:  --SVFCFEVELV
          SVFCFEVELV
Subjt:  --SVFCFEVELV

KAG7012293.1 30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-5075.61Show/hide
Query:  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR-----------
        LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR           
Subjt:  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR-----------

Query:  ---------------------RVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSSILL
                             RVWKPESRAEEQQKQE TRRKDMDEGDDNWEFYQ      I+L
Subjt:  ---------------------RVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSSILL

XP_022954830.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata]3.7e-7898.8Show/hide
Query:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
        MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
Subjt:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP
        CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQ  LP
Subjt:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP

XP_022994169.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima]1.5e-7193.37Show/hide
Query:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
        MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQS TK  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
Subjt:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP
        CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQ KQE TRRKDM+E +DNW+FYQ  LP
Subjt:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP

XP_023542788.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo]5.5e-7495.78Show/hide
Query:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
        MDAATTSLTEFFSFLSISKPSTPH ESVSLNFQS TKP LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
Subjt:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP
        CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQ KQE TRRKDMDEGDDNWEFYQ  LP
Subjt:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ6 Uncharacterized protein1.4e-3862.05Show/hide
Query:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK
        AAT+S+T FFSFLSISK S  H  SVS+N QS     L RL A  +R +V SSS E     L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECK
Subjt:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSS
        RRRFFENSQAKRKRKARE+AKRNRKRR  +P+S   EQ  Q+    K+ DE DDNW+FYQ  LP S
Subjt:  RRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSS

A0A1S3AZ70 uncharacterized protein LOC1034841454.0e-3861.45Show/hide
Query:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK
        AAT+S+T FFSFLSISK S  H  SVS+NFQS  K    RL A  +R +V SSS E       + NYNVLITV  N+ E+++VN+FR QVLRAGILQECK
Subjt:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSS
        RRRFFENSQAKRKRKARE+AKRNRKRR  +P+S  E+Q  ++    K+ DE DDNW+FYQ  LP S
Subjt:  RRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSS

A0A6J1GTI1 30S ribosomal protein S21, chloroplastic-like1.8e-7898.8Show/hide
Query:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
        MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
Subjt:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP
        CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQ  LP
Subjt:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP

A0A6J1K257 30S ribosomal protein S21, chloroplastic-like7.2e-7293.37Show/hide
Query:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
        MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQS TK  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE
Subjt:  MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP
        CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQ KQE TRRKDM+E +DNW+FYQ  LP
Subjt:  CKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP

E5GBW8 Structural constituent of ribosome4.0e-3861.45Show/hide
Query:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK
        AAT+S+T FFSFLSISK S  H  SVS+NFQS  K    RL A  +R +V SSS E       + NYNVLITV  N+ E+++VN+FR QVLRAGILQECK
Subjt:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK

Query:  RRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSS
        RRRFFENSQAKRKRKARE+AKRNRKRR  +P+S  E+Q  ++    K+ DE DDNW+FYQ  LP S
Subjt:  RRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSS

SwissProt top hitse value%identityAlignment
P82024 30S ribosomal protein S21, chloroplastic2.3e-1435.29Show/hide
Query:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTS----------------PILSVRN-------YNVLITVDNND
        A+T+SL  F S L  S  S P   +          PN   L++ +   S++S   E+ +                P L+  N       YNV + VD+N+
Subjt:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTS----------------PILSVRN-------YNVLITVDNND

Query:  PEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP
         EE+L+N+FRR+V+RAG++QECKRRR+FEN Q ++KRK RE+AKRN +RR  +   R     K+E T+    ++  DNW+  +   P
Subjt:  PEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILP

Arabidopsis top hitse value%identityAlignment
AT3G27160.1 Ribosomal protein S21 family protein3.3e-2140.54Show/hide
Query:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLAR-------LAAARTRSSVTSSSPESTS---PILSVRN-------YNVLITVDNNDPEEKLV
        AA+ SLT F SF+S  K  T      +L   S T     R       +A   T S+ +S S E  S   P L+  N       YNV + V++N+ EE+LV
Subjt:  AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLAR-------LAAARTRSSVTSSSPESTS---PILSVRN-------YNVLITVDNNDPEEKLV

Query:  NQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQE---ITRRKDMDEGDDNWEFYQSILPS
        N+FRR+V+R G++QECKRRR+FEN Q ++KR+ R++AKRN+KRR   P++R  ++ ++E    T+ K  DE +DNWE     +PS
Subjt:  NQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQQKQE---ITRRKDMDEGDDNWEFYQSILPS

AT5G63300.1 Ribosomal protein S21 family protein1.3e-0935.37Show/hide
Query:  SLTEFFSFLSISKPSTPHR-------ESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPIL---SVRNYNVLITVDNNDPEEKLVNQFRRQVLRAG
        SL+E  S L  SKP +P          SVS     H       L A         + P   +  L       YNV +   + + EE+LVN F+R   RAG
Subjt:  SLTEFFSFLSISKPSTPHR-------ESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPIL---SVRNYNVLITVDNNDPEEKLVNQFRRQVLRAG

Query:  ILQECKRRRFFENSQAKRKRKARESAKRNRKRRV-WKPESRAEEQQKQEITRRKDMDEGDDNWE
        +LQE +RRRFFE+S  K+ RK +E+AK+ RKRR   KP+  +  + ++        DE DD+WE
Subjt:  ILQECKRRRFFENSQAKRKRKARESAKRNRKRRV-WKPESRAEEQQKQEITRRKDMDEGDDNWE

AT5G63300.2 Ribosomal protein S21 family protein4.2e-0837.12Show/hide
Query:  SLTEFFSFLSISKPSTPHR-------ESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPIL---SVRNYNVLITVDNNDPEEKLVNQFRRQVLRAG
        SL+E  S L  SKP +P          SVS     H       L A         + P   +  L       YNV +   + + EE+LVN F+R   RAG
Subjt:  SLTEFFSFLSISKPSTPHR-------ESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPIL---SVRNYNVLITVDNNDPEEKLVNQFRRQVLRAG

Query:  ILQECKRRRFFENSQAKRKRKARESAKRNRKR
        +LQE +RRRFFE+S  K+ RK +E+AK+ RKR
Subjt:  ILQECKRRRFFENSQAKRKRKARESAKRNRKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCGTCCACTCCACACCGTGAGTCAGTCTCTTTAAACTTTCAGTCTCATACGAA
GCCAAACCTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCA
CTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGC
CAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCAAAAACAGGAAATCACTCG
GAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAAAGCATCTTGCCTTCGAGCATCCTTCTGTTGATGTTATTCAATGCAGGCAGGTCTGTCTTCTGCT
TTGAAGTTGAGCTGGTGTAG
mRNA sequenceShow/hide mRNA sequence
CGGCAGTCCGCAGAGGAAGTGGAAGACGGGATCACCGGTGAGTCGCCATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCGTCC
ACTCCACACCGTGAGTCAGTCTCTTTAAACTTTCAGTCTCATACGAAGCCAAACCTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGA
ATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAG
CTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGAAGGGTTTGG
AAGCCTGAATCAAGAGCTGAGGAGCAGCAAAAACAGGAAATCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAAAGCATCTTGCCTTCGAG
CATCCTTCTGTTGATGTTATTCAATGCAGGCAGGTCTGTCTTCTGCTTTGAAGTTGAGCTGGTGTAG
Protein sequenceShow/hide protein sequence
MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENS
QAKRKRKARESAKRNRKRRVWKPESRAEEQQKQEITRRKDMDEGDDNWEFYQSILPSSILLLMLFNAGRSVFCFEVELV