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CmoCh18G002810 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G002810
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPatatin
Genome locationCmo_Chr18:1842684..1843960
RNA-Seq ExpressionCmoCh18G002810
SyntenyCmoCh18G002810
Gene Ontology termsGO:0000162 - tryptophan biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573198.1 hypothetical protein SDJN03_27085, partial [Cucurbita argyrosperma subsp. sororia]2.1e-5098.1Show/hide
Query:  MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPKMNKISGFGYTILRNDF
        MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIM WRRKKKRTGICFVPKMN+ISGFGYTILRNDF
Subjt:  MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPKMNKISGFGYTILRNDF

Query:  HSFHM
        HSFHM
Subjt:  HSFHM

KAG6584077.1 hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia]3.2e-3067.26Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK-------------MNKISGFG
        TA VAIGTRGT+GSL+K EIDY+AKIELERC  SS SS R Q PDMA+S CSSSPPTFW S+M WRRKKKR+   FVPK             MNKISGF 
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK-------------MNKISGFG

Query:  YTILRNDFHSFHM
        YTIL+N+FHS HM
Subjt:  YTILRNDFHSFHM

KAG7012374.1 hypothetical protein SDJN02_25126, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-5098.1Show/hide
Query:  MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPKMNKISGFGYTILRNDF
        MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIM WRRKKKRTGICFVPKMN+ISGFGYTILRNDF
Subjt:  MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPKMNKISGFGYTILRNDF

Query:  HSFHM
        HSFHM
Subjt:  HSFHM

KAG7019678.1 hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-2965.79Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK-------------MNKISGFG
        TA VAIGTRGT+GSL+K EIDY+AKIELERC  SS SS R Q PDMA+S CSS PPTFW S+M WRRKKKR+   FVPK             MNKISGF 
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK-------------MNKISGFG

Query:  YTILRNDFHSFHMN
        YTIL+N+FHS HM+
Subjt:  YTILRNDFHSFHMN

XP_016898893.1 PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]2.5e-2764.29Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISGFGY
        TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQSIM WRRKKK T   F+ K            MNKISG  Y
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISGFGY

Query:  TILRNDFHSFHM
        TIL+NDFHS H+
Subjt:  TILRNDFHSFHM

TrEMBL top hitse value%identityAlignment
A0A0A0LX43 Uncharacterized protein7.9e-2764.86Show/hide
Query:  APVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISGFGYT
        APVAIGTRGT+GSLVK EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQS+M WRRK K T   FV K            MNKISG  YT
Subjt:  APVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISGFGYT

Query:  ILRNDFHSFHM
        IL+NDFHS HM
Subjt:  ILRNDFHSFHM

A0A1S4DSE9 uncharacterized protein LOC1034854091.2e-2764.29Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISGFGY
        TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQSIM WRRKKK T   F+ K            MNKISG  Y
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISGFGY

Query:  TILRNDFHSFHM
        TIL+NDFHS H+
Subjt:  TILRNDFHSFHM

A0A5A7UTL1 Uncharacterized protein6.5e-2163.92Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISG
        TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQSIM WRRKKK T   F+ K            MNKISG
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISG

A0A6J1CHB1 uncharacterized protein LOC1110108626.3e-2461.06Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSS-CSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISGFG
        TAPVAIGTRGTVGSLVK EIDY+AKIE ERC  +          DMASSS  SSSPPTFW ++M WRRKKKR G  F+ K            +NKISGF 
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSS-CSSSPPTFWQSIMLWRRKKKRTGICFVPK------------MNKISGFG

Query:  YTILRNDFHSFHM
        YTIL+NDF+S HM
Subjt:  YTILRNDFHSFHM

I1M118 Uncharacterized protein2.4e-1545.22Show/hide
Query:  VTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASS-SCSSSPPTFWQSIMLWRRKKKRTGICFVPK-------------MNKISG
        + APVAIGTRGT+GSLV+ EI+Y+ K ELER  SS          DM S  S S S P+FW+ +  W+R+K+R    F+PK             +NK +G
Subjt:  VTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASS-SCSSSPPTFWQSIMLWRRKKKRTGICFVPK-------------MNKISG

Query:  FGYTILRNDFHSFHM
        F Y ILRND ++FH+
Subjt:  FGYTILRNDFHSFHM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21780.1 unknown protein5.6e-0936.28Show/hide
Query:  VTAPVAIGTRGTVGSLVKNEIDYYAKIEL------ERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRT---GICFVPKM---------N
        + AP+AIGTRGT+GSLV+ EIDY+            R  +S  + +  ++ D +SS   S     W S   WR+KK++T   G  F P M         N
Subjt:  VTAPVAIGTRGTVGSLVKNEIDYYAKIEL------ERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRT---GICFVPKM---------N

Query:  KISGFGYTILRND
        ++ GF Y IL++D
Subjt:  KISGFGYTILRND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTG
CAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTTGTGGCGAAGGAAGA
AGAAGCGAACCGGGATTTGTTTTGTCCCAAAAATGAATAAGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGAACAGCCACCACAAC
AATTCAAGCCCACATCTCTCCTCTTCTATTAGCAGATCCAAACCTACCAATAGGGAGCGGACTCATTCAACAAAAGCATTACAAATTTCAACCAGCGCAAAAGCTAGAAC
ATTAAACTTGACAATGGAATTCCTCGTCTGTAGAACAAGAACAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTG
CAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTTGTGGCGAAGGAAGA
AGAAGCGAACCGGGATTTGTTTTGTCCCAAAAATGAATAAGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGAACAGCCACCACAAC
AATTCAAGCCCACATCTCTCCTCTTCTATTAGCAGATCCAAACCTACCAATAGGGAGCGGACTCATTCAACAAAAGCATTACAAATTTCAACCAGCGCAAAAGCTAGAAC
ATTAAACTTGACAATGGAATTCCTCGTCTGTAGAACAAGAACAAAATGA
Protein sequenceShow/hide protein sequence
MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPKMNKISGFGYTILRNDFHSFHMNSHHN
NSSPHLSSSISRSKPTNRERTHSTKALQISTSAKARTLNLTMEFLVCRTRTK