; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh18G003010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G003010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor ILR3-like
Genome locationCmo_Chr18:1954504..1955265
RNA-Seq ExpressionCmoCh18G003010
SyntenyCmoCh18G003010
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0055072 - iron ion homeostasis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR044818 - Transcription factor ILR3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573215.1 Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia]3.8e-5197.3Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MILQLRDE QKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHP  FSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

KAG7012388.1 Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-53100Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

XP_022954639.1 transcription factor ILR3-like [Cucurbita moschata]1.8e-53100Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

XP_023542755.1 transcription factor bHLH115-like isoform X3 [Cucurbita pepo subsp. pepo]1.1e-5097.3Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHP  FSAPNHVVGAKFVPVIGYPGVSMWKLMP GAIDT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

XP_023542756.1 transcription factor ILR3-like isoform X4 [Cucurbita pepo subsp. pepo]1.1e-5097.3Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHP  FSAPNHVVGAKFVPVIGYPGVSMWKLMP GAIDT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

TrEMBL top hitse value%identityAlignment
A0A6J1EI94 transcription factor ILR3-like2.9e-4486.49Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MI+ LRDEAQKLKESNE FLEKINEMKAEK+ELRDEKQRLKEAKDNL+QKMKTF TQPSFL HPP FS+PN VVG K VPVIGYPGVSMW+ M PGAIDT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

A0A6J1GSZ2 transcription factor ILR3-like8.8e-54100Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

A0A6J1JZF6 transcription factor ILR3-like isoform X22.7e-5093.69Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MILQLRDEAQKL+ESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPP FSAPNHVVGAK +PVIGYPGVSMWK MPPG +DT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

A0A6J1K1I8 transcription factor ILR3-like isoform X12.7e-5093.69Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MILQLRDEAQKL+ESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPP FSAPNHVVGAK +PVIGYPGVSMWK MPPG +DT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

A0A6J1KKT6 transcription factor ILR3-like3.7e-4485.59Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT
        MI+ LRDEAQKLKESNE FLEKINEMKAEK+ELRDEKQRLKEAKDNL+QKMK F TQPSFLPHPP FS+PN VVG K VPVIGYPGVSMW+ M PG IDT
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDT

Query:  SQDHVLRPPVA
        SQDHVLRPPVA
Subjt:  SQDHVLRPPVA

SwissProt top hitse value%identityAlignment
Q8L467 Transcription factor bHLH1042.3e-1450Show/hide
Query:  QLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS--FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDTS
        QLRDEA KL+E+N+  LE+I  +KAEKNELR+EK  LK  K+  +Q++K+ +T PS  F+PH P  +A NH   A + P  GY  + MW  MP    DTS
Subjt:  QLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS--FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDTS

Query:  QDHVLRPPVA
        +D  LRPP A
Subjt:  QDHVLRPPVA

Q9C682 Transcription factor bHLH1159.8e-2656.52Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS----FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPG
        M+ Q RDEAQKLK+ N +  EKI E+K EKNELRDEKQ+LK  K+ + Q++K   TQP     FLP+P   S      G+K VP   YPG +MW+ MPP 
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS----FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPG

Query:  AIDTSQDHVLRPPVA
        A+DTSQDHVLRPPVA
Subjt:  AIDTSQDHVLRPPVA

Q9FH37 Transcription factor ILR37.3e-2958.97Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTF-ITQPSFLPHPPPF-----SAPNHVVGAKFVPVIGYPGVSMWKLMP
        M+ QLR EAQKLK+SN +  +KI E+K EKNELRDEKQRLK  K+ L+Q++K     QPSF P PP       SA     G K VP+I YPGV+MW+ MP
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTF-ITQPSFLPHPPPF-----SAPNHVVGAKFVPVIGYPGVSMWKLMP

Query:  PGAIDTSQDHVLRPPVA
        P ++DTSQDHVLRPPVA
Subjt:  PGAIDTSQDHVLRPPVA

Q9LTC7 Transcription factor bHLH341.6e-1238.39Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFIT-QPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAID
        ++ QLR EA +L+E+N+  LE+I  +KA+KNELR+EK  LK  K+ ++Q++K+ +   P F+P   P +  +H +   +      P + MW  +PP   D
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFIT-QPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAID

Query:  TSQDHVLRPPVA
        TS+D    PPVA
Subjt:  TSQDHVLRPPVA

Arabidopsis top hitse value%identityAlignment
AT1G51070.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.0e-2756.52Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS----FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPG
        M+ Q RDEAQKLK+ N +  EKI E+K EKNELRDEKQ+LK  K+ + Q++K   TQP     FLP+P   S      G+K VP   YPG +MW+ MPP 
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS----FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPG

Query:  AIDTSQDHVLRPPVA
        A+DTSQDHVLRPPVA
Subjt:  AIDTSQDHVLRPPVA

AT1G51070.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.0e-2756.52Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS----FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPG
        M+ Q RDEAQKLK+ N +  EKI E+K EKNELRDEKQ+LK  K+ + Q++K   TQP     FLP+P   S      G+K VP   YPG +MW+ MPP 
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS----FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPG

Query:  AIDTSQDHVLRPPVA
        A+DTSQDHVLRPPVA
Subjt:  AIDTSQDHVLRPPVA

AT4G14410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.6e-1550Show/hide
Query:  QLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS--FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDTS
        QLRDEA KL+E+N+  LE+I  +KAEKNELR+EK  LK  K+  +Q++K+ +T PS  F+PH P  +A NH   A + P  GY  + MW  MP    DTS
Subjt:  QLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS--FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDTS

Query:  QDHVLRPPVA
        +D  LRPP A
Subjt:  QDHVLRPPVA

AT4G14410.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.6e-1550Show/hide
Query:  QLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS--FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDTS
        QLRDEA KL+E+N+  LE+I  +KAEKNELR+EK  LK  K+  +Q++K+ +T PS  F+PH P  +A NH   A + P  GY  + MW  MP    DTS
Subjt:  QLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPS--FLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDTS

Query:  QDHVLRPPVA
        +D  LRPP A
Subjt:  QDHVLRPPVA

AT5G54680.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.2e-3058.97Show/hide
Query:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTF-ITQPSFLPHPPPF-----SAPNHVVGAKFVPVIGYPGVSMWKLMP
        M+ QLR EAQKLK+SN +  +KI E+K EKNELRDEKQRLK  K+ L+Q++K     QPSF P PP       SA     G K VP+I YPGV+MW+ MP
Subjt:  MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTF-ITQPSFLPHPPPF-----SAPNHVVGAKFVPVIGYPGVSMWKLMP

Query:  PGAIDTSQDHVLRPPVA
        P ++DTSQDHVLRPPVA
Subjt:  PGAIDTSQDHVLRPPVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTGCAGCTAAGAGATGAAGCTCAGAAGCTGAAGGAGTCCAATGAGAATTTTCTGGAGAAGATCAATGAAATGAAGGCTGAAAAGAATGAACTACGAGATGAGAA
ACAGAGGCTAAAAGAAGCAAAAGACAATCTTAAACAGAAAATGAAAACCTTCATTACTCAACCAAGTTTCCTGCCTCACCCTCCTCCATTTTCTGCTCCAAATCATGTTG
TTGGGGCGAAGTTCGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGAAGCTTATGCCTCCGGGCGCTATCGATACGTCTCAAGACCACGTTCTCCGGCCACCAGTT
GCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCTTGCAGCTAAGAGATGAAGCTCAGAAGCTGAAGGAGTCCAATGAGAATTTTCTGGAGAAGATCAATGAAATGAAGGCTGAAAAGAATGAACTACGAGATGAGAA
ACAGAGGCTAAAAGAAGCAAAAGACAATCTTAAACAGAAAATGAAAACCTTCATTACTCAACCAAGTTTCCTGCCTCACCCTCCTCCATTTTCTGCTCCAAATCATGTTG
TTGGGGCGAAGTTCGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGAAGCTTATGCCTCCGGGCGCTATCGATACGTCTCAAGACCACGTTCTCCGGCCACCAGTT
GCCTGACTTGGTAGAGATCTTCCATTTTCACTGGCTTTGCTTTTGCATGCGAGGATTCCTATGTTGGTTTTTCTGTAGGGCTGACATGGTTCTGTTGTCTGTTAGATTTT
CATGATTGAATTGGCTTAAATGTATGTTTTGTTATAGAAATTCCGCTGATCAAAATCAATATAGTCTACTCCATAAGTTCTTAGCCTTACTCTTCTTCAGCAGAAAGACG
TGTTTGCTCCGAGAGAAACAATCAGTCTTTAGAAGATTATAGAGTTTAAACTAATAGAACTATGCTCGGGTTGACTGATTTTTCTTTAGATGTCCATTGTTCGGCATAGG
ACTTCAACAATCCTCAACACTCG
Protein sequenceShow/hide protein sequence
MILQLRDEAQKLKESNENFLEKINEMKAEKNELRDEKQRLKEAKDNLKQKMKTFITQPSFLPHPPPFSAPNHVVGAKFVPVIGYPGVSMWKLMPPGAIDTSQDHVLRPPV
A