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CmoCh18G003710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G003710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr18:2414441..2414659
RNA-Seq ExpressionCmoCh18G003710
SyntenyCmoCh18G003710
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012455.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-2385.94Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLCAIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQEAA
        M+TKGCSPSVVTYTSMIHGLCA+QVL+DMMGKGIAPNVFTYSTL+DGFCKAGHSLQA    E A
Subjt:  MDTKGCSPSVVTYTSMIHGLCAIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQEAA

XP_022139830.1 pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia]8.0e-1873.44Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        M+TKGCSPSVVTYTS+IHGLC       A+ +L+DMMGKGI PNVFTYS+LMDGFCKAGHS +A
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

XP_022139832.1 pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia]8.0e-1873.44Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        M+TKGCSPSVVTYTS+IHGLC       A+ +L+DMMGKGI PNVFTYS+LMDGFCKAGHS +A
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

XP_022927208.1 pentatricopeptide repeat-containing protein At5g46100 [Cucurbita moschata]2.3e-1771.88Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        M+ KGCSPSV+TYTSMIHGLC       A+ +L+DMM KGI PNVFTYS+LMDGFCKAGHSL+A
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

XP_023001715.1 pentatricopeptide repeat-containing protein At5g46100 [Cucurbita maxima]1.8e-1773.44Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        M+ KGCSPSVVTYTSMIHGLC       A+ +L+DMM KGI PNVFTYS+LMDGFCKAGHSL+A
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

TrEMBL top hitse value%identityAlignment
A0A2N9FIY0 Senescence domain-containing protein2.1e-1658.33Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE-----AANFLDEMVI
        M+TKGC PSVVTY+S+IHGLC       A+ +L++M+ K I PNVFTYS LMDGFCK G S QA    E      ANFLDEMV+
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE-----AANFLDEMVI

A0A6J1CDW1 pentatricopeptide repeat-containing protein At5g46100 isoform X13.9e-1873.44Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        M+TKGCSPSVVTYTS+IHGLC       A+ +L+DMMGKGI PNVFTYS+LMDGFCKAGHS +A
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

A0A6J1CF14 pentatricopeptide repeat-containing protein At5g46100 isoform X23.9e-1873.44Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        M+TKGCSPSVVTYTS+IHGLC       A+ +L+DMMGKGI PNVFTYS+LMDGFCKAGHS +A
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

A0A6J1EKD3 pentatricopeptide repeat-containing protein At5g461001.1e-1771.88Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        M+ KGCSPSV+TYTSMIHGLC       A+ +L+DMM KGI PNVFTYS+LMDGFCKAGHSL+A
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

A0A6J1KLZ3 pentatricopeptide repeat-containing protein At5g461008.7e-1873.44Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        M+ KGCSPSVVTYTSMIHGLC       A+ +L+DMM KGI PNVFTYS+LMDGFCKAGHSL+A
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

SwissProt top hitse value%identityAlignment
Q0WVK7 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial9.2e-0945Show/hide
Query:  GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        GCSP+VVTYT++I GLC       A ++L +M   G+ PN+FTY+++++G CK+G+  +A
Subjt:  GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

Q3ECK2 Pentatricopeptide repeat-containing protein At1g62680, mitochondrial2.4e-0944.93Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE
        ++ KG  P+VVTYT++++GLC       A ++L DM+ K I PNV TYS L+D F K G  L+A    E
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE

Q9FIX3 Pentatricopeptide repeat-containing protein At5g397102.1e-0848.28Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKA
        M+  G SPSVVTY ++I+G C       AI VL+DM  KG++P+V +YST++ GFC++
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKA

Q9FMF6 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial2.1e-0843.84Show/hide
Query:  GCSPSVVTYTSMIHGL-------CAIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQEAANFLDEM
        G  P V TY S+I+G         A++VL DM  KG  PNV++Y+ L+DGFCK G      +  EA N L+EM
Subjt:  GCSPSVVTYTSMIHGL-------CAIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQEAANFLDEM

Q9FNL2 Pentatricopeptide repeat-containing protein At5g461004.3e-1456.52Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE
        M  K C+P+VVTYTS+I+GLC       A++ L++M  KGI PNVFTYS+LMDG CK G SLQA    E
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE

Arabidopsis top hitse value%identityAlignment
AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein6.6e-1045Show/hide
Query:  GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        GCSP+VVTYT++I GLC       A ++L +M   G+ PN+FTY+++++G CK+G+  +A
Subjt:  GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

AT1G05670.2 Pentatricopeptide repeat (PPR-like) superfamily protein6.6e-1045Show/hide
Query:  GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA
        GCSP+VVTYT++I GLC       A ++L +M   G+ PN+FTY+++++G CK+G+  +A
Subjt:  GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA

AT1G62680.1 Pentatricopeptide repeat (PPR) superfamily protein1.7e-1044.93Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE
        ++ KG  P+VVTYT++++GLC       A ++L DM+ K I PNV TYS L+D F K G  L+A    E
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE

AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.5e-0948.28Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKA
        M+  G SPSVVTY ++I+G C       AI VL+DM  KG++P+V +YST++ GFC++
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKA

AT5G46100.1 Pentatricopeptide repeat (PPR) superfamily protein3.0e-1556.52Show/hide
Query:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE
        M  K C+P+VVTYTS+I+GLC       A++ L++M  KGI PNVFTYS+LMDG CK G SLQA    E
Subjt:  MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATTCAAGTACTTAAAGATATGATGGGCAAGGGTATTGCACCTAA
TGTATTTACTTACAGTACCCTAATGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGTAGATTTCAAGAAGCTGCAAACTTCTTGGATGAGATGGTCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATTCAAGTACTTAAAGATATGATGGGCAAGGGTATTGCACCTAA
TGTATTTACTTACAGTACCCTAATGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGTAGATTTCAAGAAGCTGCAAACTTCTTGGATGAGATGGTCATTTGA
Protein sequenceShow/hide protein sequence
MDTKGCSPSVVTYTSMIHGLCAIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQEAANFLDEMVI