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CmoCh18G004870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G004870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTransmembrane protein
Genome locationCmo_Chr18:3357627..3358079
RNA-Seq ExpressionCmoCh18G004870
SyntenyCmoCh18G004870
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573403.1 hypothetical protein SDJN03_27290, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5985.33Show/hide
Query:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA
        MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSG GGDHIRGA
Subjt:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA

Query:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        LIVVSL                    FKKQNSRSPSSLSASETASI+VSK
Subjt:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

KAG7012565.1 hypothetical protein SDJN02_25317, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-7398.67Show/hide
Query:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA
        MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSG GGDHIRGA
Subjt:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA

Query:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        LIVVSLVCGIIGFSLLIASAFIYFFKFKKQ+SRSPSSLSASETASIIVSK
Subjt:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

XP_022954449.1 uncharacterized protein LOC111456713 [Cucurbita moschata]8.7e-75100Show/hide
Query:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA
        MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA
Subjt:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA

Query:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
Subjt:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

XP_022994105.1 uncharacterized protein LOC111489933 [Cucurbita maxima]7.2e-6994Show/hide
Query:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA
        MAIPSQIAAFAAV C LAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGN+ +SS VELPKAVNTSLPSQWWNRSH NRSG+GGDHIRGA
Subjt:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA

Query:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASI+VSK
Subjt:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

XP_023519911.1 uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo]2.1e-5275.48Show/hide
Query:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGA-----GGD
        M I S+IAA AA+YC LA IF  G SNARDLRPSEHGLEYQNPGA  NSS +MQSFF+GNSWSSS+V LPKA+NTSLPSQWWNRSH +RSGA     GGD
Subjt:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGA-----GGD

Query:  HIRGALIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        HIRGAL+V SLVCG+IG SLLIASAFIY FKF+KQN RS SSLS SET +II +K
Subjt:  HIRGALIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

TrEMBL top hitse value%identityAlignment
A0A5D3C2L6 Uncharacterized protein7.0e-4670.59Show/hide
Query:  SQIAAFAAVYCFLAAIFFF--GCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSG---AGGDHIRG
        S I +FA +Y  LA I       SNARDLRPSEHGL+YQNP A  NSS  MQSFF+GNSWS+S+V LPKA+NTSLP QWWNRSH NRSG   AGGDHIRG
Subjt:  SQIAAFAAVYCFLAAIFFF--GCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSG---AGGDHIRG

Query:  ALIVVSLVCGIIGFSLLIASAFIYFFKFKKQ--NSRSPSSLSASETASIIVSK
        AL+V SLVCGIIG SLL+ASAFIYFFKF+KQ  +S S SSLSASET +II +K
Subjt:  ALIVVSLVCGIIGFSLLIASAFIYFFKFKKQ--NSRSPSSLSASETASIIVSK

A0A6J1EH69 uncharacterized protein LOC1114342712.3e-5274.84Show/hide
Query:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGA-----GGD
        M I S+IAA AA+YC +A IF  G SNARDLRPSEHGLEYQNPGA  NSS +MQSFF+GNSWSSS+V LPKA+NTSLPSQWWNRSH +RSGA     GGD
Subjt:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGA-----GGD

Query:  HIRGALIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        HIRGAL+V SLVCG+IG SLLIASAFIY FKF+KQN RS SSLS SET +II +K
Subjt:  HIRGALIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

A0A6J1GT11 uncharacterized protein LOC1114567134.2e-75100Show/hide
Query:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA
        MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA
Subjt:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA

Query:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
Subjt:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

A0A6J1K0B3 uncharacterized protein LOC1114899333.5e-6994Show/hide
Query:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA
        MAIPSQIAAFAAV C LAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGN+ +SS VELPKAVNTSLPSQWWNRSH NRSG+GGDHIRGA
Subjt:  MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGA

Query:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASI+VSK
Subjt:  LIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

A0A6J1KLE3 uncharacterized protein LOC1114952325.0e-5275.16Show/hide
Query:  IPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRS-----GAGGDHI
        I S+IAAFAA+YC LA IF  G SNARDLRPSEHGLEYQNPGA  NSS +MQSFF+GNSWSSS+V LPKA+NTSLPSQWWNRSH +RS     G  GDHI
Subjt:  IPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRS-----GAGGDHI

Query:  RGALIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK
        RGAL+V SLVCG+IG SLLIASAFIY FKF+KQN RS SSLS SET +II +K
Subjt:  RGALIVVSLVCGIIGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30515.1 unknown protein8.9e-0941.28Show/hide
Query:  NARDLRPSEHGLE-YQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGALIVV-SLVCGIIGFSLLIASAFIYF
        NAR+LRPS+HGLE Y  PG     SS M SFF G   S+    +    ++ LPS   +           D +   ++VV SLVCG+ G +L++ASA IYF
Subjt:  NARDLRPSEHGLE-YQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGALIVV-SLVCGIIGFSLLIASAFIYF

Query:  FKF-KKQNS
          + K QNS
Subjt:  FKF-KKQNS

AT4G21740.1 unknown protein5.6e-1137.96Show/hide
Query:  IFFFGCSNARDLRPSEHGLEYQ---NPGATGNSSSNMQSFFQGNSWSSSEVE-----LPK--AVNTSLPSQWWNRSHANRSGAG--GDHI-RGALIVVSL
        + F G S A +LRPS+HGL+YQ    P  + +    M+SFF G+S SSS        LPK  A +      WW      R GAG   DH+ R   +  S+
Subjt:  IFFFGCSNARDLRPSEHGLEYQ---NPGATGNSSSNMQSFFQGNSWSSSEVE-----LPK--AVNTSLPSQWWNRSHANRSGAG--GDHI-RGALIVVSL

Query:  VCGIIGFSLLIASAFIYFFKFKKQN-SRSPSSLSASE
        +CG+ G +LL+    IYFF+++K N S SP+   + E
Subjt:  VCGIIGFSLLIASAFIYFFKFKKQN-SRSPSSLSASE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTCCCTCGCAAATTGCTGCATTCGCCGCCGTCTATTGCTTTCTCGCCGCCATTTTCTTCTTCGGATGCTCAAATGCGAGAGACCTGCGTCCATCGGAGCACGG
TTTGGAGTACCAAAACCCTGGCGCTACTGGAAACTCTTCATCGAATATGCAATCGTTCTTCCAAGGAAACTCCTGGTCCTCCTCCGAGGTCGAGCTTCCGAAGGCGGTGA
ACACGAGCCTGCCGTCGCAGTGGTGGAATCGCAGCCACGCTAACCGCTCTGGAGCAGGCGGAGATCACATTCGCGGCGCGTTGATTGTTGTGAGTTTGGTATGTGGAATT
ATAGGCTTTTCTTTACTGATTGCTTCTGCTTTTATTTACTTCTTCAAGTTCAAGAAGCAGAATAGTAGATCGCCGTCCTCGCTTTCTGCCTCTGAAACTGCTAGCATTAT
TGTCAGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATTCCCTCGCAAATTGCTGCATTCGCCGCCGTCTATTGCTTTCTCGCCGCCATTTTCTTCTTCGGATGCTCAAATGCGAGAGACCTGCGTCCATCGGAGCACGG
TTTGGAGTACCAAAACCCTGGCGCTACTGGAAACTCTTCATCGAATATGCAATCGTTCTTCCAAGGAAACTCCTGGTCCTCCTCCGAGGTCGAGCTTCCGAAGGCGGTGA
ACACGAGCCTGCCGTCGCAGTGGTGGAATCGCAGCCACGCTAACCGCTCTGGAGCAGGCGGAGATCACATTCGCGGCGCGTTGATTGTTGTGAGTTTGGTATGTGGAATT
ATAGGCTTTTCTTTACTGATTGCTTCTGCTTTTATTTACTTCTTCAAGTTCAAGAAGCAGAATAGTAGATCGCCGTCCTCGCTTTCTGCCTCTGAAACTGCTAGCATTAT
TGTCAGCAAGTGA
Protein sequenceShow/hide protein sequence
MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGNSWSSSEVELPKAVNTSLPSQWWNRSHANRSGAGGDHIRGALIVVSLVCGI
IGFSLLIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK