CuGenDBv2

Gene ID	CmoCh18G005040
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	primase homolog protein-like isoform X1
Genome location	Cmo_Chr18:3580311..3586316
RNA-Seq Expression	CmoCh18G005040
Synteny	CmoCh18G005040
Gene Ontology terms	GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6573428.1 Primase-like protein, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-226

98.74

Show/hide

Query:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTP--PSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCL
        MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIF HPLNNFSFSSPSLPLYPTRL CALSPTP  PSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCL
Subjt:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTP--PSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCL

Query:  LCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTAD
        LCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTAD
Subjt:  LCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTAD

Query:  RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSC
        RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSC
Subjt:  RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSC

Query:  KDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS
        KDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAI+DAKSYQLCDTDEIQVEEDLESFHEPS
Subjt:  KDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS

XP_022955059.1 primase homolog protein-like isoform X1 [Cucurbita moschata]

1.6e-229

100

Show/hide

Query:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLC
        MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLC
Subjt:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLC

Query:  PKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQ
        PKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQ
Subjt:  PKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQ

Query:  AAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKD
        AAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKD
Subjt:  AAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKD

Query:  LLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS
        LLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS
Subjt:  LLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS

XP_022955060.1 primase homolog protein-like isoform X2 [Cucurbita moschata]

8.4e-186

100

Show/hide

Query:  MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELI
        MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELI
Subjt:  MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELI

Query:  TYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP
        TYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP
Subjt:  TYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP

Query:  TKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL
        TKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL
Subjt:  TKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL

Query:  CDTDEIQVEEDLESFHEPS
        CDTDEIQVEEDLESFHEPS
Subjt:  CDTDEIQVEEDLESFHEPS

XP_022994814.1 primase homolog protein isoform X1 [Cucurbita maxima]

4.6e-224

97.24

Show/hide

Query:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSP----PPVKVLMEKMDLIGIVCDEQCTPGKYY
        MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSP    PPVKVLMEKMDLIGIVCDEQCTPGKYY
Subjt:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSP----PPVKVLMEKMDLIGIVCDEQCTPGKYY

Query:  CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQT
        CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELITYFSKRMISQETLKRNVVMQT
Subjt:  CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQT

Query:  ADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLW
        A RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTNAVASIQKDTAYQYLW
Subjt:  ADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLW

Query:  SCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS
        SCKDLLDKVPR+ILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAIEDAKSYQLCDTD IQVE DLESFHEPS
Subjt:  SCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS

XP_023541322.1 primase homolog protein-like [Cucurbita pepo subsp. pepo]

2.7e-224

97.24

Show/hide

Query:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTP----PSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYY
        MAASILLPIVLQIRRIQMPMKTPFNFN NHRPA+FSHPLNNFSFSSPSLPLYPTRLSCALSPTP    PSPSPPPVKVLMEKMDLIGIVCDE CTPGKYY
Subjt:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTP----PSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYY

Query:  CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQT
        CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELITYFSKRMISQETLKRNVVMQT
Subjt:  CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQT

Query:  ADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLW
        ADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLW
Subjt:  ADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLW

Query:  SCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS
        SCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAIEDAKSYQLCDT +IQVEEDLESFHEPS
Subjt:  SCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CNI0 primase homolog protein isoform X1

2.3e-165

77.31

Show/hide

Query:  LLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPS-LPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLCPKCK
        ++P  LQIR  +   + P N  FNHRPA   HPLN FSFSSP  L    TR S A S  PP PSPPPVKVLMEKMDLIGI CDE CTPGKYYCL CPKCK
Subjt:  LLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPS-LPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLCPKCK

Query:  GGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQAAIA
        GG L ERSLSLHV+PTGDFAMWRC+ SECGWAGRIFADGRLAFN   RT KL G +AK+SL+LEPLGDELI YFSKRMI QETL+RN VMQ A RQ  IA
Subjt:  GGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQAAIA

Query:  FTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAV-ASIQKDTAYQYLWSCKDLLD
        FTYRQNGQL+GCKYRT++K+FWQ KGTEKL YGIDDINDADE+IIVEGEMDKLSVEEAGFLNCISVPGGAP KVST++V  SI+KDTAYQYLWSCKD LD
Subjt:  FTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAV-ASIQKDTAYQYLWSCKDLLD

Query:  KVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQ
        KV  IILATDSDEPGQALAEELA RLGKHRCWRVDWPYKDDFNRFKDANEILV LG DALK+A+++AKSY+  + ++IQ
Subjt:  KVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQ

A0A6J1GU46 primase homolog protein-like isoform X2

4.1e-186

100

Show/hide

Query:  MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELI
        MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELI
Subjt:  MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELI

Query:  TYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP
        TYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP
Subjt:  TYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP

Query:  TKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL
        TKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL
Subjt:  TKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL

Query:  CDTDEIQVEEDLESFHEPS
        CDTDEIQVEEDLESFHEPS
Subjt:  CDTDEIQVEEDLESFHEPS

A0A6J1GUU9 primase homolog protein-like isoform X1

7.9e-230

100

Show/hide

Query:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLC
        MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLC
Subjt:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLC

Query:  PKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQ
        PKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQ
Subjt:  PKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQ

Query:  AAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKD
        AAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKD
Subjt:  AAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKD

Query:  LLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS
        LLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS
Subjt:  LLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS

A0A6J1K2E1 primase homolog protein isoform X2

2.1e-182

97.81

Show/hide

Query:  MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELI
        MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELI
Subjt:  MEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELI

Query:  TYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP
        TYFSKRMISQETLKRNVVMQTA RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP
Subjt:  TYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP

Query:  TKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL
         KVSTNAVASIQKDTAYQYLWSCKDLLDKVPR+ILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAIEDAKSYQL
Subjt:  TKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQL

Query:  CDTDEIQVEEDLESFHEPS
        CDTD IQVE DLESFHEPS
Subjt:  CDTDEIQVEEDLESFHEPS

A0A6J1K3X3 primase homolog protein isoform X1

2.2e-224

97.24

Show/hide

Query:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSP----PPVKVLMEKMDLIGIVCDEQCTPGKYY
        MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSP    PPVKVLMEKMDLIGIVCDEQCTPGKYY
Subjt:  MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSP----PPVKVLMEKMDLIGIVCDEQCTPGKYY

Query:  CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQT
        CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGT KKSLILEPLGDELITYFSKRMISQETLKRNVVMQT
Subjt:  CLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQT

Query:  ADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLW
        A RQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTNAVASIQKDTAYQYLW
Subjt:  ADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLW

Query:  SCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS
        SCKDLLDKVPR+ILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEIL+QLGADALKKAIEDAKSYQLCDTD IQVE DLESFHEPS
Subjt:  SCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

1.0e-80

44.13

Show/hide

Query:  RPAIFSHPLNNFSFSSPSLPLYP-TRLSCALSPTPPSPSPPPVKVLMEKMDLIGI------------VCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHV
        RP + S P+      S + P Y  T    + +  P  P+P   +V  +K  ++              V  E C PG++  L+CP C+GG   E+SLSL +
Subjt:  RPAIFSHPLNNFSFSSPSLPLYP-TRLSCALSPTPPSPSPPPVKVLMEKMDLIGI------------VCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHV

Query:  IPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGC
         P G  A W CF+ +CG  G + ADG LA        K+      + + LEPL DE+  YF+ R IS++TL+RN VMQ     +  IAFTY Q G+LV C
Subjt:  IPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGC

Query:  KYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDE
        KYR++ K F+Q + T ++ YG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  + S  KDT Y++LW+C D L K  RI++ATD D 
Subjt:  KYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDE

Query:  PGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDT-------DEIQVEEDLESFHE
        PGQA+AEE+A RLGK RCWRV WP K +   FKDANE+L+  G   LK+AI DA+ Y +          DEI    D    HE
Subjt:  PGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDT-------DEIQVEEDLESFHE

F4I6E6 Primase homolog protein

6.5e-80

50.33

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Query:  LMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDEL
        LM K+   GI   + C PG   CL+CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DG+L   +     K+      +S+ LEPL DE+
Subjt:  LMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDEL

Query:  ITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG
          +F+ R IS +TL+RN VMQ   D +  IAFTY Q G+LV CKYR++ KKF Q + T K+ YG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP G
Subjt:  ITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG

Query:  APTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSY
        AP  VS+  + S  KDTA++Y+W+C D L K  RI++ATD D PGQALAEELA RLGK RCW V WP K +   FKDANE+L+  G   LK+AI +A+ Y
Subjt:  APTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSY

Query:  QL
         L
Subjt:  QL

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

4.6e-81

50.33

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Query:  LMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDEL
        LM K+   GI   + C PG   CL+CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DG+L   +     K+      +S+ LEPL DE+
Subjt:  LMEKMDLIGIVCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDEL

Query:  ITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG
          +F+ R IS +TL+RN VMQ   D +  IAFTY Q G+LV CKYR++ KKF Q + T K+ YG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP G
Subjt:  ITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGG

Query:  APTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSY
        AP  VS+  + S  KDTA++Y+W+C D L K  RI++ATD D PGQALAEELA RLGK RCW V WP K +   FKDANE+L+  G   LK+AI +A+ Y
Subjt:  APTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDEPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSY

Query:  QL
         L
Subjt:  QL

AT1G30680.1 toprim domain-containing protein

7.1e-82

44.13

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Query:  RPAIFSHPLNNFSFSSPSLPLYP-TRLSCALSPTPPSPSPPPVKVLMEKMDLIGI------------VCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHV
        RP + S P+      S + P Y  T    + +  P  P+P   +V  +K  ++              V  E C PG++  L+CP C+GG   E+SLSL +
Subjt:  RPAIFSHPLNNFSFSSPSLPLYP-TRLSCALSPTPPSPSPPPVKVLMEKMDLIGI------------VCDEQCTPGKYYCLLCPKCKGGRLMERSLSLHV

Query:  IPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGC
         P G  A W CF+ +CG  G + ADG LA        K+      + + LEPL DE+  YF+ R IS++TL+RN VMQ     +  IAFTY Q G+LV C
Subjt:  IPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQ-TADRQAAIAFTYRQNGQLVGC

Query:  KYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDE
        KYR++ K F+Q + T ++ YG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  + S  KDT Y++LW+C D L K  RI++ATD D 
Subjt:  KYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSDE

Query:  PGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDT-------DEIQVEEDLESFHE
        PGQA+AEE+A RLGK RCWRV WP K +   FKDANE+L+  G   LK+AI DA+ Y +          DEI    D    HE
Subjt:  PGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDT-------DEIQVEEDLESFHE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAGCTTCGATTCTGCTCCCCATTGTTCTCCAAATCCGTCGGATTCAAATGCCAATGAAAACCCCTTTCAATTTCAACTTCAATCATCGCCCTGCCATTTTC
TCTCATCCGCTTAACAATTTCTCCTTCTCTTCCCCTTCTCTTCCACTCTACCCAACCCGATTATCATGCGCTCTTTCTCCTACTCCGCCGTCGCCATCGCCACCA
CCAGTGAAGGTTCTAATGGAGAAAATGGATCTTATCGGAATAGTCTGTGATGAACAATGTACTCCTGGAAAATACTATTGCCTGCTCTGTCCCAAGTGCAAGGGT
GGGCGCTTAATGGAGAGGAGCTTATCTCTACATGTAATTCCAACAGGAGATTTTGCAATGTGGAGGTGTTTCCAGTCTGAGTGTGGTTGGGCAGGCCGGATATTT
GCAGATGGAAGATTGGCGTTTAATGAGTTCAGCAGAACTGCAAAGTTGTTTGGAGGAACTGCAAAGAAGAGTCTTATTTTGGAGCCTCTTGGTGATGAGCTAATC
ACTTACTTCAGCAAGAGAATGATATCCCAGGAAACTCTCAAAAGGAATGTTGTTATGCAAACAGCCGATCGTCAGGCTGCAATTGCATTCACTTATCGACAAAAC
GGACAGCTTGTTGGCTGTAAGTACCGAACCATAAACAAGAAATTTTGGCAGGCGAAGGGCACAGAAAAATTGTTTTATGGGATTGATGATATTAATGATGCAGAT
GAACTCATCATTGTCGAAGGTGAAATGGATAAACTTTCAGTAGAAGAAGCTGGCTTCCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAACTAAGGTTTCAACT
AATGCAGTAGCATCAATTCAAAAGGATACTGCATATCAGTATTTATGGAGCTGCAAAGACTTGTTAGATAAGGTTCCCCGCATTATCTTGGCTACTGATAGTGAT
GAACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACTTCGGCTTGGAAAACATAGATGTTGGCGGGTAGATTGGCCTTATAAAGATGACTTCAACCGTTTTAAAGAT
GCCAATGAGATTCTGGTGCAGTTGGGGGCAGATGCTTTAAAGAAAGCAATTGAAGATGCCAAGTCATATCAACTTTGTGATACAGATGAAATACAAGTAGAAGAG
GACCTCGAGAGCTTCCACGAGCCTTCGTAA

mRNA sequence

Show/hide mRNA sequence

GAACCGTTAGATTAACTCATAATTTCCCTCAATCCAATCCTGAGAACCAAGCCAGCCTTTTGATTCCAAAGTTCATCTTATGAATCGTTTGGACAATACCACCAT
ACTCCGAATCATGGATACAGAAACATTGCGTGACCTCCCATTTCTTCAGAAACTCCCAACTCCAGAACCGAGGAACAGTCGATCAGCATGGAAACCAGATCCTTT
CGCAGAATTTTGAAGGATAGAAGAACGGCTACATGTCCTGCAAATTGGAAGGGATTGTGTGAATCCGGACTTGCGCAGGAGAAAAAACAAAAAAGTTTGTTCTTA
CCCTAATATTTTTTTACCGATTCCTCCTTTTAAAAGTATCTGAAACTATGTTTAAAAAAGAAAAAAATCAAAGAAAGCGGATATGGCAGCTTCGATTCTGCTCCC
CATTGTTCTCCAAATCCGTCGGATTCAAATGCCAATGAAAACCCCTTTCAATTTCAACTTCAATCATCGCCCTGCCATTTTCTCTCATCCGCTTAACAATTTCTC
CTTCTCTTCCCCTTCTCTTCCACTCTACCCAACCCGATTATCATGCGCTCTTTCTCCTACTCCGCCGTCGCCATCGCCACCACCAGTGAAGGTTCTAATGGAGAA
AATGGATCTTATCGGAATAGTCTGTGATGAACAATGTACTCCTGGAAAATACTATTGCCTGCTCTGTCCCAAGTGCAAGGGTGGGCGCTTAATGGAGAGGAGCTT
ATCTCTACATGTAATTCCAACAGGAGATTTTGCAATGTGGAGGTGTTTCCAGTCTGAGTGTGGTTGGGCAGGCCGGATATTTGCAGATGGAAGATTGGCGTTTAA
TGAGTTCAGCAGAACTGCAAAGTTGTTTGGAGGAACTGCAAAGAAGAGTCTTATTTTGGAGCCTCTTGGTGATGAGCTAATCACTTACTTCAGCAAGAGAATGAT
ATCCCAGGAAACTCTCAAAAGGAATGTTGTTATGCAAACAGCCGATCGTCAGGCTGCAATTGCATTCACTTATCGACAAAACGGACAGCTTGTTGGCTGTAAGTA
CCGAACCATAAACAAGAAATTTTGGCAGGCGAAGGGCACAGAAAAATTGTTTTATGGGATTGATGATATTAATGATGCAGATGAACTCATCATTGTCGAAGGTGA
AATGGATAAACTTTCAGTAGAAGAAGCTGGCTTCCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAACTAAGGTTTCAACTAATGCAGTAGCATCAATTCAAAA
GGATACTGCATATCAGTATTTATGGAGCTGCAAAGACTTGTTAGATAAGGTTCCCCGCATTATCTTGGCTACTGATAGTGATGAACCAGGGCAAGCTTTGGCAGA
AGAGCTAGCACTTCGGCTTGGAAAACATAGATGTTGGCGGGTAGATTGGCCTTATAAAGATGACTTCAACCGTTTTAAAGATGCCAATGAGATTCTGGTGCAGTT
GGGGGCAGATGCTTTAAAGAAAGCAATTGAAGATGCCAAGTCATATCAACTTTGTGATACAGATGAAATACAAGTAGAAGAGGACCTCGAGAGCTTCCACGAGCC
TTCGTAACTATGGAGAATCATTTTGAGTGGTAATCGATATCAATTAGGGAATGATCATTTCGTTCGTGCAGTGGAAACATTGATATCGACTTTGATTTTACTTGA
AATTAAAATAAAAACTTATGAAGAAAGTTACCGTGAGTTTTTAATCTATTCCCTCGATCTTTCAATATCACTATATTGTTTAATTTGTTTAACCACTTTTGTTAA
TTATTTAGTGGCCCT

Protein sequence

Show/hide protein sequence

MAASILLPIVLQIRRIQMPMKTPFNFNFNHRPAIFSHPLNNFSFSSPSLPLYPTRLSCALSPTPPSPSPPPVKVLMEKMDLIGIVCDEQCTPGKYYCLLCPKCKG
GRLMERSLSLHVIPTGDFAMWRCFQSECGWAGRIFADGRLAFNEFSRTAKLFGGTAKKSLILEPLGDELITYFSKRMISQETLKRNVVMQTADRQAAIAFTYRQN
GQLVGCKYRTINKKFWQAKGTEKLFYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPTKVSTNAVASIQKDTAYQYLWSCKDLLDKVPRIILATDSD
EPGQALAEELALRLGKHRCWRVDWPYKDDFNRFKDANEILVQLGADALKKAIEDAKSYQLCDTDEIQVEEDLESFHEPS

CmoCh18G005040 (gene) of Cucurbita moschata (Rifu) v1 genome