CuGenDBv2

Gene ID	CmoCh18G005790
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	pentatricopeptide repeat-containing protein At4g16390, chloroplastic
Genome location	Cmo_Chr18:5468147..5469549
RNA-Seq Expression	CmoCh18G005790
Synteny	CmoCh18G005790
Gene Ontology terms	GO:0009658 - chloroplast organization (biological process) GO:0030071 - regulation of mitotic metaphase/anaphase transition (biological process) GO:0031425 - chloroplast RNA processing (biological process) GO:0005680 - anaphase-promoting complex (cellular component) GO:0009570 - chloroplast stroma (cellular component) GO:0009941 - chloroplast envelope (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

OVA02182.1 Smr protein/MutS2 C-terminal [Macleaya cordata]

1.9e-15

64.62

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV
        MKA+G+ PNLVIY     A+GRAKRPW+ K +YKEMIKNG  P+W +YASLL+AYG ARYG +A+
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV

XP_004139516.1 pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis sativus]

1.6e-17

71.21

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIKNG  PSW +YASLL+AYG ARYG +A++
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

XP_008464281.1 PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis melo]

5.9e-17

69.7

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIK+G  PSW +YASLL+AYG ARYG +A++
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

XP_022142513.1 pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Momordica charantia]

9.1e-18

72.73

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIKNG  PSW +YASLL+AYG ARYG +A+L
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

XP_038877791.1 pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Benincasa hispida]

9.1e-18

72.73

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIKNG  PSW +YASLL+AYG ARYG +A+L
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVP1 Smr domain-containing protein

7.5e-18

71.21

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIKNG  PSW +YASLL+AYG ARYG +A++
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

A0A1S3CL39 pentatricopeptide repeat-containing protein At4g16390, chloroplastic

2.9e-17

69.7

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIK+G  PSW +YASLL+AYG ARYG +A++
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

A0A200PVF3 Smr protein/MutS2 C-terminal

9.2e-16

64.62

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV
        MKA+G+ PNLVIY     A+GRAKRPW+ K +YKEMIKNG  P+W +YASLL+AYG ARYG +A+
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV

A0A5A7TLM5 Pentatricopeptide repeat-containing protein

2.9e-17

69.7

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIK+G  PSW +YASLL+AYG ARYG +A++
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

A0A6J1CNE5 pentatricopeptide repeat-containing protein At4g16390, chloroplastic

4.4e-18

72.73

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIKNG  PSW +YASLL+AYG ARYG +A+L
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

SwissProt top hits

e value

%identity

Alignment

B4F8Z1 Pentatricopeptide repeat-containing protein ATP4, chloroplastic

1.0e-11

50.77

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV
        MKAIG+ PNLV+Y     A+GRA RPW +KT+++EM+   + PS  +Y  LL AY  ARYG +A+
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV

Q10PZ4 Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic

8.6e-11

46.15

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV
        MKA G+ PNLV+Y     A+GRA RPW +KT+++E++    +P+  +Y  LL AY  ARYG +A+
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV

Q8GWE0 Pentatricopeptide repeat-containing protein At4g16390, chloroplastic

5.2e-16

55.38

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV
        MKA+G+ PNLVIY     ++GRAKRPW+ K +YK++I NG  P+W++YA+L++AYG ARYG +A+
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV

Q9LS25 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic

1.1e-05

35.38

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV
        MK++ + PN+V+Y     A+GRA +P   ++L+ EM++ GL P+  +  +L++ YG AR+  +A+
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV

Arabidopsis top hits

e value

%identity

Alignment

AT1G73710.1 Pentatricopeptide repeat (PPR) superfamily protein

4.7e-04

37.5

Show/hide

Query:  INPNLVIYAIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL
        I+ N+V+ A+GRA +  +++  + EM  NG+LP+  +Y  L+  YG A    EA+L
Subjt:  INPNLVIYAIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL

AT4G16390.1 pentatricopeptide (PPR) repeat-containing protein

3.7e-17

55.38

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV
        MKA+G+ PNLVIY     ++GRAKRPW+ K +YK++I NG  P+W++YA+L++AYG ARYG +A+
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV

AT5G46580.1 pentatricopeptide (PPR) repeat-containing protein

7.7e-07

35.38

Show/hide

Query:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV
        MK++ + PN+V+Y     A+GRA +P   ++L+ EM++ GL P+  +  +L++ YG AR+  +A+
Subjt:  MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGGCTATAGGCATCAACCCAAACTTGGTTATATATGCTATTGGTAGGGCTAAAAGGCCATGGAAGATCAAGACCCTCTACAAAGAGATGATTAAAAATGGACTTTT
GCCAAGTTGGACATCTTATGCTTCTCTTTTACAAGCCTATGGGGGAGCCAGATACGGTCCTGAAGCAGTGTTATGCTTGGCACGTTGTCATCTCATGCCCTTCCAATGGA
CAAACATCTCAAACCCACATGCTATACATATTCACGAGACTTCCATTCCTTCTCCATTCATTGACAAAATGGGAAACTGCATCATCTTGCCTTGCGTTCACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKAIGINPNLVIYAIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVLCLARCHLMPFQWTNISNPHAIHIHETSIPSPFIDKMGNCIILPCVH

CmoCh18G005790 (gene) of Cucurbita moschata (Rifu) v1 genome