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CmoCh18G006000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G006000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGag/pol protein
Genome locationCmo_Chr18:5831675..5832253
RNA-Seq ExpressionCmoCh18G006000
SyntenyCmoCh18G006000
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]2.3e-4068.57Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQPS+SLRHEAIK+IY  RMKEGTSVREHVLD+M+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L  +KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGK
        +  EANVA++K K +RGS SKNK GP  SK+ M KKGKGK
Subjt:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGK

KAA0032020.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-3866.91Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+++VHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSFSKNKSGPSTSKSVMMKKGKG
        Q GEANVA S +K  RGS S  KS PS+S S   KK KG
Subjt:  QTGEANVAIS-KKLLRGSFSKNKSGPSTSKSVMMKKGKG

KAA0035295.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-3856.25Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  R+KEGTSVREHVLD+M+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L   KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQKQIKENVSIATKTGTERETAENSL
        +  E NVA +K K  RGS SK+K+GPS     + KKGKGK  +  N++    K++ E   I  K GTE   +  ++
Subjt:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQKQIKENVSIATKTGTERETAENSL

KAA0053407.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-3862.09Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  RMKEGTSVRE+VLD+M+HFN+ E N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L   KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQK
        +  EANVAI+K K  RGS  ++KSGPS     + KKGKGK    T +++KV+K
Subjt:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQK

TYK31700.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-3863.33Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  RMKEGT VREHVLD+M+ FN+AE N+  IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L   KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHK
        +  EANVAI+K K  RGS SK K+GP   K  + KKGKGK   P   K K
Subjt:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHK

TrEMBL top hitse value%identityAlignment
A0A5A7SMN4 Gag/pol protein1.1e-3866.91Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+++VHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSFSKNKSGPSTSKSVMMKKGKG
        Q GEANVA S +K  RGS S  KS PS+S S   KK KG
Subjt:  QTGEANVAIS-KKLLRGSFSKNKSGPSTSKSVMMKKGKG

A0A5A7UFY5 Gag/pol protein2.4e-3862.09Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  RMKEGTSVRE+VLD+M+HFN+ E N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L   KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQK
        +  EANVAI+K K  RGS  ++KSGPS     + KKGKGK    T +++KV+K
Subjt:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQK

A0A5D3CRD1 Gag/pol protein6.2e-3956.25Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIKYIY  R+KEGTSVREHVLD+M+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L   KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQKQIKENVSIATKTGTERETAENSL
        +  E NVA +K K  RGS SK+K+GPS     + KKGKGK  +  N++    K++ E   I  K GTE   +  ++
Subjt:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQKQIKENVSIATKTGTERETAENSL

A0A5D3CWX9 Gag/pol protein3.1e-3862Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        +FGQP +SLRHEAIKYIY  R KEGTSVREHVL++M+HFN+AE N  VIDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L   KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHK
        +  EANVA +K K  RGS SK+K+GP  S   + KKGKGK    T  K +
Subjt:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHK

E2GK51 Gag/pol protein (Fragment)1.1e-4068.57Show/hide
Query:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQPS+SLRHEAIK+IY  RMKEGTSVREHVLD+M+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L  +KG
Subjt:  MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGK
        +  EANVA++K K +RGS SKNK GP  SK+ M KKGKGK
Subjt:  QTGEANVAISK-KLLRGSFSKNKSGPSTSKSVMMKKGKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTAGACATCATGGT
CCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTTCAGTTCCGCACAAATGTGG
TAATGAACAAAATAGAATATAATTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTCC
AAGAAATTACTACGAGGATCGTTCTCTAAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTATGATGAAGAAGGGTAAAGGGAAAAATAAGATTCCTACTAACCGCAA
ACACAAGGTTCAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGAAAGAGAAACTGCCGAAAATAGCTTGCAGAGAAGAAAGCCGAAAAGACACA
ACAAGGTAAATATGATTTACTCATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTAGACATCATGGT
CCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTTCAGTTCCGCACAAATGTGG
TAATGAACAAAATAGAATATAATTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTCC
AAGAAATTACTACGAGGATCGTTCTCTAAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTATGATGAAGAAGGGTAAAGGGAAAAATAAGATTCCTACTAACCGCAA
ACACAAGGTTCAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGAAAGAGAAACTGCCGAAAATAGCTTGCAGAGAAGAAAGCCGAAAAGACACA
ACAAGGTAAATATGATTTACTCATTGTAG
Protein sequenceShow/hide protein sequence
MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDIMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKGQTGEANVAIS
KKLLRGSFSKNKSGPSTSKSVMMKKGKGKNKIPTNRKHKVQKQIKENVSIATKTGTERETAENSLQRRKPKRHNKVNMIYSL