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CmoCh18G006050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G006050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem I iron-sulfur center
Genome locationCmo_Chr18:7138730..7147443
RNA-Seq ExpressionCmoCh18G006050
SyntenyCmoCh18G006050
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
GO:0048038 - quinone binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR001457 - NADH:ubiquinone/plastoquinone oxidoreductase, chain 6
IPR017491 - Photosystem I protein PsaC
IPR017896 - 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 - 4Fe-4S ferredoxin, iron-sulphur binding, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH03065.1 hypothetical protein Prudu_013827 [Prunus dulcis]2.5e-5144.9Show/hide
Query:  NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIR--------------
        N+ FVAAAQLLIYVGAINVLI+FAVMFM GSEY KDLNLWTVG+ VT  VCTSIFV LM TI DTSWYGIIWTTRSNQI+E DLI               
Subjt:  NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIR--------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTR
                                        CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTR
Subjt:  --------------------------------CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTR

KAF4348543.1 hypothetical protein F8388_000222 [Cannabis sativa]6.6e-6068.85Show/hide
Query:  PQVKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI----------
        PQ+K       AAQLLIYVGAINVLI+FAVMFM GSEY KD +L T+G+GVT LVCT           +TSWYGIIWTTRSNQI+E DL+          
Subjt:  PQVKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI----------

Query:  --------------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
                      RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  --------------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

KAG8363223.1 hypothetical protein BUALT_BualtPtG0005800 [Buddleja alternifolia]1.6e-4560.74Show/hide
Query:  LIYVGAINVLI-------IFAVMFMKGS--EYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQ------------ILEPDLIRCTQ
        ++Y+G  N+ I       +F +  + G+  EY KD +LWTVG+GVT +VCTS+F+SL+TTI DTSWY  +W    ++             +   + RCTQ
Subjt:  LIYVGAINVLI-------IFAVMFMKGS--EYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQ------------ILEPDLIRCTQ

Query:  CVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGL
        CVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLW ETTRSMGL
Subjt:  CVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGL

RYR58339.1 hypothetical protein Ahy_A05g024027 [Arachis hypogaea]1.3e-5244.29Show/hide
Query:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI------------
        + +N+ FVAAAQLLIYVGAINVLI+FAVMFM G EY +D +L+TVG G+T +VCTSIFVSL+TTI DTSWYG+IWTTR NQI+E DLI            
Subjt:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
                            RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSV+VYLWHETTRSM   +
Subjt:  --------------------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

YP_009447504.1 NADH dehydrogenase subunit 6 [Cucurbita maxima]2.4e-3894.57Show/hide
Query:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ
        + ANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI  +Q
Subjt:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ

TrEMBL top hitse value%identityAlignment
A0A0S2IDF6 NdhG1.2e-3894.57Show/hide
Query:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ
        + ANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI  +Q
Subjt:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ

A0A0S2IGB7 NADH dehydrogenase subunit 61.2e-3894.57Show/hide
Query:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ
        + ANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI  +Q
Subjt:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ

A0A445D565 9 kDa polypeptide6.4e-5344.29Show/hide
Query:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI------------
        + +N+ FVAAAQLLIYVGAINVLI+FAVMFM G EY +D +L+TVG G+T +VCTSIFVSL+TTI DTSWYG+IWTTR NQI+E DLI            
Subjt:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
                            RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSV+VYLWHETTRSM   +
Subjt:  --------------------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

A0A4Y1RG88 9 kDa polypeptide1.2e-5144.9Show/hide
Query:  NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIR--------------
        N+ FVAAAQLLIYVGAINVLI+FAVMFM GSEY KDLNLWTVG+ VT  VCTSIFV LM TI DTSWYGIIWTTRSNQI+E DLI               
Subjt:  NAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIR--------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTR
                                        CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTR
Subjt:  --------------------------------CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTR

A0A7J6DR26 9 kDa polypeptide3.2e-6068.85Show/hide
Query:  PQVKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI----------
        PQ+K       AAQLLIYVGAINVLI+FAVMFM GSEY KD +L T+G+GVT LVCT           +TSWYGIIWTTRSNQI+E DL+          
Subjt:  PQVKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLI----------

Query:  --------------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
                      RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  --------------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

SwissProt top hitse value%identityAlignment
A4GGE7 Photosystem I iron-sulfur center8.2e-3798.57Show/hide
Query:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        I CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

A4QJG7 Photosystem I iron-sulfur center5.3e-3697.14Show/hide
Query:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        I CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

P10793 Photosystem I iron-sulfur center8.2e-3798.57Show/hide
Query:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        I CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

P42046 Photosystem I iron-sulfur center8.2e-3798.57Show/hide
Query:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        I CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

Q2QD38 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic7.9e-4092.39Show/hide
Query:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ
        + ANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKD NLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILE DLI  +Q
Subjt:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ

Arabidopsis top hitse value%identityAlignment
ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding3.8e-3797.14Show/hide
Query:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        I CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  IRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

ATCG01080.1 NADH:ubiquinone/plastoquinone oxidoreductase, chain 63.6e-3272.83Show/hide
Query:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ
        + +N+ FVAAAQLLIYVGAINVLIIFAVMFM  SEYS D NLWT+GNG+T LVCT+I   LM+TI+DTSWYG+IWTT+ NQILE DLI  +Q
Subjt:  VKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTTTCCTCCACAAGTTAAGGCAAACGCCCAGTTTGTAGCTGCCGCGCAACTCCTTATTTACGTGGGAGCTATAAATGTTTTAATCATATTTGCTGTGATGTTCAT
GAAGGGTTCAGAATATTCCAAAGATTTGAATCTTTGGACCGTTGGGAATGGAGTTACTTTTCTGGTTTGTACAAGTATTTTTGTTTCACTAATGACTACTATTGTAGATA
CGTCATGGTATGGGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCCAGATTTAATAAGGTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATG
ATACCTTGGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCTCCAAGAACAGAAGACTGTGTTGGTTGTAAGAGATGTGAATCTGCCTGTCCGACGGATTTCTTGAGTGT
TCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCTTTCCTCCACAAGTTAAGGCAAACGCCCAGTTTGTAGCTGCCGCGCAACTCCTTATTTACGTGGGAGCTATAAATGTTTTAATCATATTTGCTGTGATGTTCAT
GAAGGGTTCAGAATATTCCAAAGATTTGAATCTTTGGACCGTTGGGAATGGAGTTACTTTTCTGGTTTGTACAAGTATTTTTGTTTCACTAATGACTACTATTGTAGATA
CGTCATGGTATGGGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCCAGATTTAATAAGGTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATG
ATACCTTGGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCTCCAAGAACAGAAGACTGTGTTGGTTGTAAGAGATGTGAATCTGCCTGTCCGACGGATTTCTTGAGTGT
TCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGA
Protein sequenceShow/hide protein sequence
MSFPPQVKANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDLNLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEPDLIRCTQCVRACPTDVLEM
IPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY