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CmoCh18G006150 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G006150
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationCmo_Chr18:7482513..7482937
RNA-Seq ExpressionCmoCh18G006150
SyntenyCmoCh18G006150
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR008991 - Translation protein SH3-like domain superfamily
IPR014726 - Ribosomal protein L2, domain 3
IPR022669 - Ribosomal protein L2, C-terminal
IPR022671 - Ribosomal protein L2, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES88258.1 50S ribosomal protein L2 [Medicago truncatula]6.3e-3062.3Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA------------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA
        MPLGTAIHNIEI LGKGGQLARAA                                    GKRP++RGVVMNPVDHPHGGGEGR PIGRKKP+TPWGY A
Subjt:  MPLGTAIHNIEIILGKGGQLARAA------------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA

Query:  LG-RSRKRNKYSDNFILRRHSK
        LG RSRK+NKYSDN ILRR SK
Subjt:  LG-RSRKRNKYSDNFILRRHSK

OTF84336.1 putative ribosomal protein L2 [Helianthus annuus]2.2e-3064.17Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA----------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG
        MPLGTAIHNIEI LGKGGQLARAA                                  GKRP++RGVVMNPVDHPHGGGEGR PIGRKKP TPWGY ALG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA----------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG

Query:  -RSRKRNKYSDNFILRRHSK
         RSRKRNKYSDN ILRR SK
Subjt:  -RSRKRNKYSDNFILRRHSK

TXG75339.1 hypothetical protein E1A91_1Z025000v1, partial [Gossypium mustelinum]7.2e-3487.95Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRR
        MPLGTAIHNIEI LG+GGQLARAAGKRP++RGVVMNPVDHPHGGGEGR PIGRKKP TPWGY  LG RSRKRNKYSDN ILRR
Subjt:  MPLGTAIHNIEIILGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRR

XP_027338812.1 uncharacterized protein LOC113852671 [Abrus precatorius]3.7e-3063.11Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA------------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA
        MPLGTAIHNIEI LGKGGQLARAA                                    GKRP++RGVVMNPVDHPHGGGEGR PIGRKKPATPWGY A
Subjt:  MPLGTAIHNIEIILGKGGQLARAA------------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA

Query:  LG-RSRKRNKYSDNFILRRHSK
        LG RSRKRNKYS+N ILRR SK
Subjt:  LG-RSRKRNKYSDNFILRRHSK

YP_010035724.1 ribosomal protein L2 [Streblus indicus]3.1e-2955.63Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LGKGGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKPATPWGY ALG RSRKRNKYSDN ILRRHSK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK

TrEMBL top hitse value%identityAlignment
A0A1Y3BXU6 Putative ribosomal protein L21.1e-3064.17Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA----------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG
        MPLGTAIHNIEI LGKGGQLARAA                                  GKRP++RGVVMNPVDHPHGGGEGR PIGRKKP TPWGY ALG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA----------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG

Query:  -RSRKRNKYSDNFILRRHSK
         RSRKRNKYSDN ILRR SK
Subjt:  -RSRKRNKYSDNFILRRHSK

A0A251V5N4 Putative ribosomal protein L21.1e-3064.17Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA----------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG
        MPLGTAIHNIEI LGKGGQLARAA                                  GKRP++RGVVMNPVDHPHGGGEGR PIGRKKP TPWGY ALG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA----------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG

Query:  -RSRKRNKYSDNFILRRHSK
         RSRKRNKYSDN ILRR SK
Subjt:  -RSRKRNKYSDNFILRRHSK

A0A5C7J1U9 Ribosomal_L2_C domain-containing protein (Fragment)3.5e-3487.95Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRR
        MPLGTAIHNIEI LG+GGQLARAAGKRP++RGVVMNPVDHPHGGGEGR PIGRKKP TPWGY  LG RSRKRNKYSDN ILRR
Subjt:  MPLGTAIHNIEIILGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRR

A0A7T8ZSA1 Ribosomal protein L21.5e-2955.63Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LGKGGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKPATPWGY ALG RSRKRNKYSDN ILRRHSK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK

G7JH62 50S ribosomal protein L23.1e-3062.3Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA------------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA
        MPLGTAIHNIEI LGKGGQLARAA                                    GKRP++RGVVMNPVDHPHGGGEGR PIGRKKP+TPWGY A
Subjt:  MPLGTAIHNIEIILGKGGQLARAA------------------------------------GKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLA

Query:  LG-RSRKRNKYSDNFILRRHSK
        LG RSRK+NKYSDN ILRR SK
Subjt:  LG-RSRKRNKYSDNFILRRHSK

SwissProt top hitse value%identityAlignment
B1A976 50S ribosomal protein L2, chloroplastic3.5e-3154.93Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LGKGGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKPATPWGY ALG RSRKRNKYSDN ILRR SK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK

B1NWJ1 50S ribosomal protein L2, chloroplastic3.5e-3154.93Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LGKGGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKPATPWGY ALG RSRKRNKYSDN ILRR SK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK

Q09WV5 50S ribosomal protein L2, chloroplastic3.5e-3154.93Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LGKGGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKPATPWGY ALG RSRKRNKYSDN ILRR SK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK

Q14F95 50S ribosomal protein L2-A, chloroplastic7.8e-3154.23Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LG+GGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKPATPWGY ALG RSRKRNKYSDN ILRR SK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK

Q4VZK5 50S ribosomal protein L2, chloroplastic3.5e-3154.93Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LGKGGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKPATPWGY ALG RSRKRNKYSDN ILRR SK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK

Arabidopsis top hitse value%identityAlignment
AT2G44065.1 Ribosomal protein L2 family1.0e-0652.94Show/hide
Query:  LGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPAT---PWG
        L K GQ +R  G RP +RGV MNP DHPHGGGEG+      +  T   PWG
Subjt:  LGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPAT---PWG

AT2G44065.2 Ribosomal protein L2 family1.0e-0652.94Show/hide
Query:  LGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPAT---PWG
        L K GQ +R  G RP +RGV MNP DHPHGGGEG+      +  T   PWG
Subjt:  LGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPAT---PWG

ATCG00830.1 ribosomal protein L22.6e-2950.7Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LG+GGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKP TPWGY ALG R+RKR KYS+  ILRR SK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK

ATCG01310.1 ribosomal protein L22.6e-2950.7Show/hide
Query:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG
        MPLGTAIHNIEI LG+GGQLARAA                                                        GKRP++RGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEIILGKGGQLARAA--------------------------------------------------------GKRPILRGVVMNPVDHPHGG

Query:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK
        GEGR PIGRKKP TPWGY ALG R+RKR KYS+  ILRR SK
Subjt:  GEGRVPIGRKKPATPWGYLALG-RSRKRNKYSDNFILRRHSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTTAGGCACGGCCATACATAACATAGAAATCATACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTAAGCGTCCTATACTAAGAGGAGTAGTTATG
AACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGTCCCAATTGGTAGAAAAAAACCTGCAACCCCTTGGGGTTATCTTGCACTTGGAAGAAGTAGAAAA
AGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCATAGTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTTAGGCACGGCCATACATAACATAGAAATCATACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTAAGCGTCCTATACTAAGAGGAGTAGTTATG
AACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGTCCCAATTGGTAGAAAAAAACCTGCAACCCCTTGGGGTTATCTTGCACTTGGAAGAAGTAGAAAA
AGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCATAGTAAATAA
Protein sequenceShow/hide protein sequence
MPLGTAIHNIEIILGKGGQLARAAGKRPILRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYLALGRSRKRNKYSDNFILRRHSK