CuGenDBv2

Gene ID	CmoCh18G006570
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Cytochrome c biogenesis protein CcsA
Genome location	Cmo_Chr18:8326125..8326492
RNA-Seq Expression	CmoCh18G006570
Synteny	CmoCh18G006570
Gene Ontology terms	GO:0017004 - cytochrome complex assembly (biological process) GO:0009507 - chloroplast (cellular component) GO:0042651 - thylakoid membrane (cellular component) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002541 - Cytochrome c assembly protein IPR045062 - Cytochrome c-type biogenesis protein CcsA/CcmC

Homology

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GenBank top hits

e value

%identity

Alignment

ALO21752.1 CcsA [Cucurbita argyrosperma]

2.5e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

ALO22063.1 CcsA [Cucurbita ecuadorensis]

1.3e-38

73.85

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSY NYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

ALO22601.1 CcsA [Cucurbita pepo subsp. fraterna]

2.5e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

YP_009447585.1 cytochrome c biogenesis protein [Cucurbita moschata]

2.5e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

YP_009505129.1 cytochrome c biogenesis protein [Cucurbita pepo]

2.5e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IDY9 Cytochrome c biogenesis protein CcsA

1.2e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

A0A0S2IET8 Cytochrome c biogenesis protein CcsA

1.2e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

A0A0S2IG17 Cytochrome c biogenesis protein CcsA

1.2e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

A0A0S2IGR6 Cytochrome c biogenesis protein CcsA

1.2e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

A0A0S2IHG4 Cytochrome c biogenesis protein CcsA

1.2e-39

74.62

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQNSIRIFGKNNHLLNALFS  E               FFSYNNYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

SwissProt top hits

e value

%identity

Alignment

B1A983 Cytochrome c biogenesis protein CcsA

1.9e-29

59.23

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSL--------REQCFTKHLFFSYNNYYKSQLIQQSDH
        M QS +LVP LQS WLMMHVSMM+L            VAL+VITF+  IRIFGK+N+ LN  FS         R        F S  NYY+ QLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSL--------REQCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFL+IGILSGAV ANE WGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

Q09FZ7 Cytochrome c biogenesis protein CcsA

1.5e-29

56.15

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDH
        MHQS +LVP LQS WLMMHVSMM+L            +AL+VI F+ +I IFGK+N+LL   FS  E  +            F S+ NYY+ QLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLREQCFTKH--------LFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYR+ISLGFIFL+IGILSGAV ANE WG+
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

Q0ZIW9 Cytochrome c biogenesis protein CcsA

6.5e-30

57.69

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH
        MHQS +LVP LQS WLMMHVSMM+L            VAL+VITF+  IRI  KNNH LN  FS  E               F S  NYY++Q IQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE--------QCFTKHLFFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYR+ISLGF+FL+IGILSGAV ANE WGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

Q2QD41 Cytochrome c biogenesis protein CcsA

8.5e-38

70.77

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE-------QCFTKHL-FFSYNNYYKSQLIQQSDH
        MHQSPLLVP LQSHWLMMHVSMM+L            VALIVITFQ +IRIF KNN+LLNALFS  E         F ++  FFS  NYYKSQLIQQ DH
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLRE-------QCFTKHL-FFSYNNYYKSQLIQQSDH

Query:  WSYRIISLGFIFLSIGILSGAVAANETWGS
        WSYRIISLGFIFLSIGILSGAV ANETWGS
Subjt:  WSYRIISLGFIFLSIGILSGAVAANETWGS

Q33BX3 Cytochrome c biogenesis protein CcsA

5.5e-29

59.02

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLREQCFTKHLFFSYNNYYKSQLIQQSDHWSYRIISL
        +HQS +LVP LQS WL+MHVSMMIL            VAL+VITF+ + ++F K+N  LN  F L E       FFS  NYY+SQLIQQ D+WSYR+ISL
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFGKNNHLLNALFSLREQCFTKHLFFSYNNYYKSQLIQQSDHWSYRIISL

Query:  GFIFLSIGILSGAVAANETWGS
        GF FL+IGILSGAV ANE WGS
Subjt:  GFIFLSIGILSGAVAANETWGS

Arabidopsis top hits

e value

%identity

Alignment

ATCG01040.1 Cytochrome C assembly protein

3.2e-24

52.94

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Query:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFG----KNNHLLNALFSL---------REQCFTKHLFFSYN-NYYKSQL
        M QS +LVP LQS WLMMHVSMMIL            +AL+VITF+     F     K N LLN LFS                +++ FS++ NYY+ QL
Subjt:  MHQSPLLVPTLQSHWLMMHVSMMIL------------VALIVITFQNSIRIFG----KNNHLLNALFSL---------REQCFTKHLFFSYN-NYYKSQL

Query:  IQQSDHWSYRIISLGFIFLSIGILSGAVAANETWGS
        IQQ D WS+RIISLGFIFL++GILSGAV ANETWGS
Subjt:  IQQSDHWSYRIISLGFIFLSIGILSGAVAANETWGS

Sequences

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CDS sequence

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ATGCATCAATCCCCACTACTAGTTCCCACTCTCCAATCTCATTGGTTAATGATGCACGTAAGCATGATGATATTGGTAGCTCTTATAGTGATTACCTTTCAAAACTCTAT
AAGAATTTTTGGTAAAAACAATCATTTATTAAATGCGTTATTTTCCTTAAGAGAACAATGTTTTACGAAACACTTATTTTTTTCTTATAATAATTATTATAAGTCTCAAC
TGATTCAACAATCAGATCATTGGAGTTATCGTATTATTAGTCTAGGCTTTATCTTTTTAAGCATAGGTATTCTTTCAGGGGCCGTAGCGGCTAATGAGACATGGGGATCG
TAA

mRNA sequence

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Protein sequence

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MHQSPLLVPTLQSHWLMMHVSMMILVALIVITFQNSIRIFGKNNHLLNALFSLREQCFTKHLFFSYNNYYKSQLIQQSDHWSYRIISLGFIFLSIGILSGAVAANETWGS

CmoCh18G006570 (gene) of Cucurbita moschata (Rifu) v1 genome