CuGenDBv2

Gene ID	CmoCh18G007080
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem II protein D1
Genome location	Cmo_Chr18:8925053..8925486
RNA-Seq Expression	CmoCh18G007080
Synteny	CmoCh18G007080
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAN85801.1 photosystem II protein [Plagiobryoides cellularis]

4.8e-45

80.15

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIYSIG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

ABL86492.1 photosystem II 32 kDa protein [Diplasiolejeunea involuta]

1.6e-45

80.15

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMGPEWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

AGU12570.1 photosystem II D1 subunit, partial [Petrocoptis pyrenaica]

6.2e-45

80.15

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IGRGS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

CAL36290.1 photosystem II 32 kDa protein [Marchesinia brachiata]

4.8e-45

75.71

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGSCCILREIGI
        LGM PWIA      VAAATAVFLIY IG+GS      +GI
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGSCCILREIGI

QHO34753.1 Photosystem II protein [Arachis hypogaea]

2.1e-45

80.15

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

TrEMBL top hits

e value

%identity

Alignment

A0A6A4NXC7 Photosystem II protein D1

3.9e-45

79.39

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        M PTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGMHPWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

A4GH32 Photosystem II protein D1

8.0e-46

80.15

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMGPEWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

A4H1H9 Photosystem II protein D1

2.3e-45

75.71

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGSCCILREIGI
        LGM PWIA      VAAATAVFLIY IG+GS      +GI
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGSCCILREIGI

Q8HRB7 Photosystem II protein D1

2.3e-45

80.15

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIYSIG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

T1WD15 Photosystem II protein D1 (Fragment)

3.0e-45

80.15

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IGRGS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

2.4e-47

79.39

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

A4QJ96 Photosystem II protein D1

2.4e-47

79.39

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

A4QJI0 Photosystem II protein D1

2.4e-47

79.39

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

P02956 Photosystem II protein D1

2.4e-47

79.39

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

Q3V554 Photosystem II protein D1

2.4e-47

79.39

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

1.7e-48

79.39

Show/hide

Query:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC
        MIPTLLTATSVFIIAFIAAPPVDIDGI EPVS SLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG              ACYMG EWELSF 
Subjt:  MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNG--------------ACYMGPEWELSFC

Query:  LGMHPWIA------VAAATAVFLIYSIGRGS
        LGM PWIA      VAAATAVFLIY IG+GS
Subjt:  LGMHPWIA------VAAATAVFLIYSIGRGS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCTGTAGATATTGATGGTATTCATGAACCTGTTTCTGTATCTCTACTTTA
CGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATCGGGTTGCACTTTTACCCAATTTGGGAAGCAGCTTCCGTTGATGAATGGTTATACAATGGTG
CATGTTACATGGGTCCAGAGTGGGAACTTAGTTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACTCAATTGGTCGAGGA
AGCTGTTGCATATTAAGAGAGATAGGTATTCTCTATTTTCACGAGTTCCGTGGACATCTCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MIPTLLTATSVFIIAFIAAPPVDIDGIHEPVSVSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGACYMGPEWELSFCLGMHPWIAVAAATAVFLIYSIGRG
SCCILREIGILYFHEFRGHL

CmoCh18G007080 (gene) of Cucurbita moschata (Rifu) v1 genome