; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh18G007660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G007660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type domain-containing protein
Genome locationCmo_Chr18:9245137..9249611
RNA-Seq ExpressionCmoCh18G007660
SyntenyCmoCh18G007660
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR044249 - Probable E3 ubiquitin-protein ligase XERICO-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012781.1 hypothetical protein SDJN02_25534, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-4899.06Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGR RRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

XP_022945499.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]1.6e-49100Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

XP_022966845.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]1.5e-4796.23Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESG+ RRISITHFKSLRQSFNGGTET+NCSVSRC+VAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

XP_023523084.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]1.5e-3479.63Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E++ E+GR RRISIT FKSL QSFN G  T+  S SRC++AEC VCLC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC

Query:  GFEADEEV
        GFEADEEV
Subjt:  GFEADEEV

XP_023541596.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]8.9e-4897.17Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSS DEYEQESGR RRISITHFKSLRQSFNGGTET+NCSVSRCSVAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

TrEMBL top hitse value%identityAlignment
A0A6J1DFU2 probable E3 ubiquitin-protein ligase XERICO3.6e-3477.27Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMM----SANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVC
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSV+QMM    SA+PSSS +EY+ E+ R RRISIT FKSLRQSFNGGTE  + S SRC  AEC VC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMM----SANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVC

Query:  LCGFEADEEV
        LCGFEADEEV
Subjt:  LCGFEADEEV

A0A6J1G151 probable E3 ubiquitin-protein ligase XERICO7.9e-50100Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

A0A6J1GZI7 probable E3 ubiquitin-protein ligase XERICO4.6e-3479.63Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E + E+GR RRISIT FKSL QSFN G  T+  S SRC +AEC VCLC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC

Query:  GFEADEEV
        GFEADEEV
Subjt:  GFEADEEV

A0A6J1HSQ5 probable E3 ubiquitin-protein ligase XERICO7.4e-4896.23Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESG+ RRISITHFKSLRQSFNGGTET+NCSVSRC+VAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEV
        EADEEV
Subjt:  EADEEV

A0A6J1J1V9 probable E3 ubiquitin-protein ligase XERICO1.6e-3479.63Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E++ E+GR RRISIT FKSL QSFN G  T+  S SRC +AEC VCLC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC

Query:  GFEADEEV
        GFEADEEV
Subjt:  GFEADEEV

SwissProt top hitse value%identityAlignment
Q9SI09 Probable E3 ubiquitin-protein ligase XERICO6.3e-0432.2Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRVRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC
        MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S      S      +   +S  + F   T T      C   + 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRVRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC

Query:  SVAECSVCLCGFEADEEV
        +  ECSVCL  F+ D E+
Subjt:  SVAECSVCLCGFEADEEV

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein6.0e-1043.18Show/hide
Query:  MNTVMSMAFLKNLVRSVLQMMSANPSSS--ADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEV
        MNTV+S+  LKN+VRSV Q++++   SS   D+  ++    RRISIT FKSL ++     E            EC VCLCGF+ +EEV
Subjt:  MNTVMSMAFLKNLVRSVLQMMSANPSSS--ADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEV

AT1G67856.1 RING/U-box superfamily protein4.3e-1643.64Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSA----DEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVC
        MG+S++P ++EGV  +P+LVMNTV+S++ +KN+VRSV+ M+S+  + +     D+  ++S R RRISITHF+SL +  N G+  +          +C VC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSA----DEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVC

Query:  LCGFEADEEV
        LCGF+ +EEV
Subjt:  LCGFEADEEV

AT2G04240.1 RING/U-box superfamily protein4.5e-0532.2Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRVRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC
        MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S      S      +   +S  + F   T T      C   + 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRVRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC

Query:  SVAECSVCLCGFEADEEV
        +  ECSVCL  F+ D E+
Subjt:  SVAECSVCLCGFEADEEV

AT2G04240.2 RING/U-box superfamily protein4.5e-0532.2Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRVRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC
        MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S      S      +   +S  + F   T T      C   + 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRVRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC

Query:  SVAECSVCLCGFEADEEV
        +  ECSVCL  F+ D E+
Subjt:  SVAECSVCLCGFEADEEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGT
GCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGTAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCT
TCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTGGAATACGAAAGA
GATATCACTTAA
mRNA sequenceShow/hide mRNA sequence
AAACCCTCAACGGATTAGCCTTCATTTTTTAGGATTTTTGAAGATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACA
CAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGTA
AGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTG
TCTGTGTGGATTTGAAGCTGACGAGGAAGTGGAATACGAAAGAGATATCACTTAA
Protein sequenceShow/hide protein sequence
MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVEYER
DIT