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CmoCh18G008580 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G008580
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor IIIA-like
Genome locationCmo_Chr18:9915171..9916831
RNA-Seq ExpressionCmoCh18G008580
SyntenyCmoCh18G008580
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.6e-1795.74Show/hide
Query:  IMMESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE
        + MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE
Subjt:  IMMESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE

KAG7012871.1 hypothetical protein SDJN02_25624, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3663.51Show/hide
Query:  MKKPTIQYELPDISEEKESGRATQLGAESHPSCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFLRSVRIYVESTSKLGKFGIRIDRDLSVNSQLATS
        MKKPTIQYELP ISEEKESGRATQLGAESH SCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFL                                 
Subjt:  MKKPTIQYELPDISEEKESGRATQLGAESHPSCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFLRSVRIYVESTSKLGKFGIRIDRDLSVNSQLATS

Query:  KIMMESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE
                           RKSNICLECGAAFKKPAYLKQHMQSHSLE
Subjt:  KIMMESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE

XP_022945877.1 transcription factor IIIA-like [Cucurbita moschata]3.8e-1797.87Show/hide
Query:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP
        MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE P
Subjt:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP

XP_022966871.1 transcription factor IIIA-like [Cucurbita maxima]2.5e-1695.74Show/hide
Query:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP
        MESGKYKDDGDDKAKDRKSNIC ECGAAFKKPAYLKQHMQSHSLE P
Subjt:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP

XP_023542929.1 transcription factor IIIA-like [Cucurbita pepo subsp. pepo]1.2e-1593.62Show/hide
Query:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP
        MESGKYKDDGDD AKDRKSNIC ECGAAFKKPAYLKQHMQSHSLE P
Subjt:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP

TrEMBL top hitse value%identityAlignment
A0A0A0KV54 Uncharacterized protein1.5e-1176.6Show/hide
Query:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP
        ME GK+ DDGDDK K  K NIC +CGAAF+KPAYLKQHMQSHSLE P
Subjt:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP

A0A6J1G248 transcription factor IIIA-like1.9e-1797.87Show/hide
Query:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP
        MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE P
Subjt:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP

A0A6J1H0A5 transcription factor IIIA isoform X11.4e-0976.6Show/hide
Query:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP
        MESGK+ +DG DK  + KSNIC ECGA FKKPAYLKQHMQSHSLE P
Subjt:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP

A0A6J1HQH9 transcription factor IIIA-like1.2e-1695.74Show/hide
Query:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP
        MESGKYKDDGDDKAKDRKSNIC ECGAAFKKPAYLKQHMQSHSLE P
Subjt:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP

A0A6J1JLR2 transcription factor IIIA isoform X11.5e-1176.6Show/hide
Query:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP
        MESGK+ D+G D+ K+ KSNIC ECGA FKKPAYLKQHMQSHSLE P
Subjt:  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECP

SwissProt top hitse value%identityAlignment
Q84MZ4 Transcription factor IIIA2.1e-0554.55Show/hide
Query:  KDDGDDKA-----KDRKSNICLECGAAFKKPAYLKQHMQSHSLE
        +++ DD+A     +   ++ C ECGA FKKPA+LKQHMQSHSLE
Subjt:  KDDGDDKA-----KDRKSNICLECGAAFKKPAYLKQHMQSHSLE

Arabidopsis top hitse value%identityAlignment
AT1G72050.2 transcription factor IIIA1.5e-0654.55Show/hide
Query:  KDDGDDKA-----KDRKSNICLECGAAFKKPAYLKQHMQSHSLE
        +++ DD+A     +   ++ C ECGA FKKPA+LKQHMQSHSLE
Subjt:  KDDGDDKA-----KDRKSNICLECGAAFKKPAYLKQHMQSHSLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGCCCACTATCCAGTATGAGCTTCCGGATATTTCGGAGGAAAAGGAAAGCGGCCGAGCAACACAGCTGGGAGCTGAATCACACCCTTCTTGCAGCACAGCCCC
TTCCTTTTTTTCTCTTGTTGCCGCCGTCGCTCGCCGGAAAGTCACCATCACCTTCTGCTGTGGCCCTTTATCCATCTCTTGCTCATTCTTAAGGTCTGTCCGGATCTATG
TTGAATCAACTTCAAAATTGGGGAAATTTGGAATTAGAATAGATCGTGATCTGAGTGTCAATTCACAGTTAGCAACGAGTAAAATCATGATGGAGAGCGGGAAATATAAG
GATGATGGAGATGATAAGGCGAAAGACAGAAAATCCAATATTTGCCTCGAATGTGGCGCTGCTTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCT
CGAGTGCCCATGTTTGGTTTTTTATTTTAGCCATCCTAATTACATGTTCTTCGCCCGATTCTGGATACCTCAGCGTGAAGCATTGGATCCCACATTAAGAACTCCAAAAT
GTATGAGGCTGCATTTTCCTAGCTTGATTGGATCAGTATCAGGTTGGGAGACCTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGCCCACTATCCAGTATGAGCTTCCGGATATTTCGGAGGAAAAGGAAAGCGGCCGAGCAACACAGCTGGGAGCTGAATCACACCCTTCTTGCAGCACAGCCCC
TTCCTTTTTTTCTCTTGTTGCCGCCGTCGCTCGCCGGAAAGTCACCATCACCTTCTGCTGTGGCCCTTTATCCATCTCTTGCTCATTCTTAAGGTCTGTCCGGATCTATG
TTGAATCAACTTCAAAATTGGGGAAATTTGGAATTAGAATAGATCGTGATCTGAGTGTCAATTCACAGTTAGCAACGAGTAAAATCATGATGGAGAGCGGGAAATATAAG
GATGATGGAGATGATAAGGCGAAAGACAGAAAATCCAATATTTGCCTCGAATGTGGCGCTGCTTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCT
CGAGTGCCCATGTTTGGTTTTTTATTTTAGCCATCCTAATTACATGTTCTTCGCCCGATTCTGGATACCTCAGCGTGAAGCATTGGATCCCACATTAAGAACTCCAAAAT
GTATGAGGCTGCATTTTCCTAGCTTGATTGGATCAGTATCAGGTTGGGAGACCTCCTGA
Protein sequenceShow/hide protein sequence
MKKPTIQYELPDISEEKESGRATQLGAESHPSCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFLRSVRIYVESTSKLGKFGIRIDRDLSVNSQLATSKIMMESGKYK
DDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLECPCLVFYFSHPNYMFFARFWIPQREALDPTLRTPKCMRLHFPSLIGSVSGWETS