CuGenDBv2

Gene ID	CmoCh18G009780
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA repair REX1-B protein
Genome location	Cmo_Chr18:10775839..10778754
RNA-Seq Expression	CmoCh18G009780
Synteny	CmoCh18G009780
Gene Ontology terms	NA
InterPro domains	IPR039491 - Required for excision 1-B domain-containing protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7012978.1 hypothetical protein SDJN02_25732 [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-107

99.52

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTP+EHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

XP_004135056.1 uncharacterized protein LOC101210078 [Cucumis sativus]

4.1e-91

87.5

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDF+KKLSL EQMEED +T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIESNF S DH+R+
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELA+ LRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ+AVTTINEHMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EI ALEDK
Subjt:  EIAALEDK

XP_022945518.1 uncharacterized protein C19orf60 homolog [Cucurbita moschata]

8.3e-108

100

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

XP_023541138.1 uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo]

4.1e-107

99.04

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHEC+HVHEITEASGTEEAEADAEYDNALKEAIKGVQ+AVTTINEHMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

XP_038892275.1 uncharacterized protein LOC120081463 [Benincasa hispida]

7.1e-91

87.02

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDF+KKLSL EQMEED RT  D+S SSNTL+LLR+FLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLC +IT EFSNCSKQVIDIESNF S DH+R+
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELA+LLRSVQE+EKQKLHLTAQIQLLKKAGRPSER+VSHENCRF  PREHECVHVHE+T ASGTEEAEA+AEYDNALKEAIKGVQ+ VTTINE+MEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUN3 Uncharacterized protein

2.0e-91

87.5

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDF+KKLSL EQMEED +T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIESNF S DH+R+
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELA+ LRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ+AVTTINEHMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EI ALEDK
Subjt:  EIAALEDK

A0A1S3BGI9 uncharacterized protein LOC103489347

2.9e-90

86.54

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDF+KKLSL EQMEED  T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIESNF + DH+R+
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELA+LLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCR   PREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ+AVTTIN+HMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EI ALEDK
Subjt:  EIAALEDK

A0A5D3CFT2 Uncharacterized protein

2.9e-90

86.54

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDF+KKLSL EQMEED  T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIESNF + DH+R+
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELA+LLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCR   PREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQ+AVTTIN+HMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EI ALEDK
Subjt:  EIAALEDK

A0A6J1G147 uncharacterized protein C19orf60 homolog

4.0e-108

100

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

A0A6J1HYI6 uncharacterized protein C19orf60 homolog

4.0e-108

100

Show/hide

Query:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
        MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI
Subjt:  MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRI

Query:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
        ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY
Subjt:  ELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

SwissProt top hits

e value

%identity

Alignment

Q17Q97 Required for excision 1-B domain-containing protein

2.1e-05

30.93

Show/hide

Query:  LLRKFLEIQQRRAEAYARLKRGFDEYMTSGREIS---YQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLTAQIQLL
        L+++  ++Q  RA+A+ RL+ G  +Y++SG       Y+    E+T  F+  S++V+ +E+    P    + LAS +RS+Q+ E+ +L   A +QL+
Subjt:  LLRKFLEIQQRRAEAYARLKRGFDEYMTSGREIS---YQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLTAQIQLL

Q9CYZ6 Required for excision 1-B domain-containing protein

7.3e-06

29.17

Show/hide

Query:  DGRTSGDSSGS---SNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREI---SYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQ
        DG  S +S+ +   +   TL+++  ++Q  RA+A+ RL +   +Y+ SG+     SY+ +  E+T  F+  S++V+ +E+    P    + LA  +RS+Q
Subjt:  DGRTSGDSSGS---SNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREI---SYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQ

Query:  EQEKQKLHLTAQIQLLKKAG
        E E+ +L   A +Q++   G
Subjt:  EQEKQKLHLTAQIQLLKKAG

Arabidopsis top hits

e value

%identity

Alignment

AT5G04910.1 unknown protein

2.4e-68

63.13

Show/hide

Query:  EDFDKKLSLAEQMEED----------GRTSG--DSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIE
        EDF KK+SL + +  D          G TS    S  +S TL LLR  LEIQQRRA+AYA LK GF EY+ SG E  YQ+LC EIT EFS CSKQV ++E
Subjt:  EDFDKKLSLAEQMEED----------GRTSG--DSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIE

Query:  SNFCSPDHDRIELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVT
        S F +P+  R +LA LL  +Q QEKQKLHLT  IQ+LKKAGRPSER+++HENC+FK P +HECVH+HEITEA+GTEEAEADAE+DNALKEAI+GVQ+AVT
Subjt:  SNFCSPDHDRIELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVT

Query:  TINEHMEEVRYEIAALE
        +INE++E++RYEI ALE
Subjt:  TINEHMEEVRYEIAALE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGATTTTGATAAGAAGCTCTCTCTGGCTGAGCAAATGGAGGAAGACGGAAGAACCTCTGGCGATTCTAGCGGTTCCTCCAACACTCTCACTTTGCTCCGCAAGTT
TCTTGAAATTCAGCAGCGTAGAGCAGAAGCTTATGCCAGGCTTAAGAGGGGTTTCGACGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCGGTGAGA
TCACTGCAGAATTCAGTAATTGCTCCAAACAAGTCATTGACATTGAGTCGAACTTCTGTAGTCCAGATCATGACAGGATCGAGTTAGCCAGCCTGCTTAGATCTGTTCAA
GAACAAGAAAAGCAGAAATTGCATCTGACAGCACAAATTCAGTTATTGAAGAAGGCTGGTCGCCCATCGGAGCGCTTGGTGAGCCACGAGAATTGCAGATTCAAGACACC
TCGAGAGCACGAGTGTGTGCATGTCCACGAGATAACTGAAGCTTCGGGTACCGAGGAAGCAGAAGCAGATGCCGAATATGACAATGCTCTCAAGGAAGCAATCAAAGGTG
TGCAAGAGGCTGTGACGACCATAAATGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAA

mRNA sequence

Show/hide mRNA sequence

ACTGAAACTGAAGGGAAAACTCGCTTCGAGCAGACGCCCTAAAGAATGGAAGATTTTGATAAGAAGCTCTCTCTGGCTGAGCAAATGGAGGAAGACGGAAGAACCTCTGG
CGATTCTAGCGGTTCCTCCAACACTCTCACTTTGCTCCGCAAGTTTCTTGAAATTCAGCAGCGTAGAGCAGAAGCTTATGCCAGGCTTAAGAGGGGTTTCGACGAGTATA
TGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCGGTGAGATCACTGCAGAATTCAGTAATTGCTCCAAACAAGTCATTGACATTGAGTCGAACTTCTGTAGTCCA
GATCATGACAGGATCGAGTTAGCCAGCCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCATCTGACAGCACAAATTCAGTTATTGAAGAAGGCTGGTCGCCC
ATCGGAGCGCTTGGTGAGCCACGAGAATTGCAGATTCAAGACACCTCGAGAGCACGAGTGTGTGCATGTCCACGAGATAACTGAAGCTTCGGGTACCGAGGAAGCAGAAG
CAGATGCCGAATATGACAATGCTCTCAAGGAAGCAATCAAAGGTGTGCAAGAGGCTGTGACGACCATAAATGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTT
GAAGATAAGTAATCTTGTGACATATGTATATGTTCATTGGTAACATGTTCTTGCTCTGCAATTGAATTGGTTATTGAAATGTACCTGTAAAGATACACAGAGTTGGTTCT
TTACTAACGTGCATTCGCTCGACGTAGGGATAAAGCGAAAAGTTTACTTTCTTCGTGTTTGGCTCGATTGGAAATAAAGCAGGGACAGGTAATAGACGTGGGAGAAGGTG
AAAGGGTGGTTCAAGCCTGCAAACCCTTTATACATAGGCTTTTGCTGCATACGGTAACAGATCCATCTCTCTACAG

Protein sequence

Show/hide protein sequence

MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQ
EQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRYEIAALEDK

CmoCh18G009780 (gene) of Cucurbita moschata (Rifu) v1 genome