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CmoCh18G009860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G009860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20
Genome locationCmo_Chr18:10824206..10824667
RNA-Seq ExpressionCmoCh18G009860
SyntenyCmoCh18G009860
Gene Ontology termsNA
InterPro domainsIPR036378 - FAS1 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573920.1 putative fasciclin-like arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]4.1e-80100Show/hide
Query:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILM
        MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILM
Subjt:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILM

Query:  INGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
        INGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
Subjt:  INGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW

KAG7012984.1 putative fasciclin-like arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-80100Show/hide
Query:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILM
        MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILM
Subjt:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILM

Query:  INGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
        INGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
Subjt:  INGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW

XP_022945764.1 LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Cucurbita moschata]9.2e-64100Show/hide
Query:  ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMA
        ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMA
Subjt:  ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMA

Query:  ERLSAKESGSEMRNITHGLALDHW
        ERLSAKESGSEMRNITHGLALDHW
Subjt:  ERLSAKESGSEMRNITHGLALDHW

XP_023541106.1 putative fasciclin-like arabinogalactan protein 20 [Cucurbita pepo subsp. pepo]2.6e-7494.12Show/hide
Query:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILM
        MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQS MTVFAPSDDTLAARIDDFTDYPSLYCRILWNDL+DLEKGTKLSTYSKG AISVAKSNGILM
Subjt:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILM

Query:  INGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
        INGVAVIYPNMYVNDWL+ H LLDV S+AERLSAKESGSEMRNITHG ALDHW
Subjt:  INGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW

XP_038893158.1 putative fasciclin-like arabinogalactan protein 20 [Benincasa hispida]2.2e-5771.25Show/hide
Query:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQ-STMTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVA
        +T +N FGEAIETLRSNGYSSMALFLESQIL F+NGQ STMTVFAPSDD LA R+D+FTDYPSLY      CR+ WNDL++LE GT+LSTYS+G+ I VA
Subjt:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQ-STMTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVA

Query:  KSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
        KS+G+L +NGVAV YPNMY+N+WL+VHGLLD FS+AER+S  ES SEMR+ THG+++DHW
Subjt:  KSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW

TrEMBL top hitse value%identityAlignment
A0A0A0KUM5 FAS1 domain-containing protein1.3e-5269.38Show/hide
Query:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVA
        +T +N FGEAIETLRS+GYSSMALFLESQIL FSNGQS+ MTVFAPSDD L  R+D FTDYPSLY      CRI WNDL+DLE GT+LSTYS+G+ I V 
Subjt:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVA

Query:  KSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLA-LDH
        KS+G+L INGVAV YPNMY+N+WL+VHGLLDVF +AER+S  ES SEMR+  H ++ +DH
Subjt:  KSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLA-LDH

A0A6J1G1W2 LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 204.5e-64100Show/hide
Query:  ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMA
        ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMA
Subjt:  ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMA

Query:  ERLSAKESGSEMRNITHGLALDHW
        ERLSAKESGSEMRNITHGLALDHW
Subjt:  ERLSAKESGSEMRNITHGLALDHW

A0A6J1H1S8 putative fasciclin-like arabinogalactan protein 209.0e-5770.44Show/hide
Query:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVAK
        +T KN F EAI+TLRSNGYSSMALFLESQI+ F+NGQS MT+FAPSDD LA RID+FTDYPSLY      CRILWNDL +LE+GT+LSTYS+G+ + +AK
Subjt:  MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVAK

Query:  SNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
        S+G+L INGVAV YPNMY+N+WL++HGLLDVFS AER+SA+ES SEM    HG+A+DHW
Subjt:  SNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW

A0A6J1HVX4 LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 201.2e-5384.38Show/hide
Query:  RFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYC------RILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDV
        RFSNGQS MTVFAPSDDTLA+RIDDFTDYPSLY       RILWNDL+DL+KGTKLSTYSKG+AISVAKSNG+LMINGVAVIYPNMY+N+WL+VHGLLDV
Subjt:  RFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYC------RILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDV

Query:  FSMAERLSAKESGSEMRNITHGLALDHW
        FSMAERLSAKESGSE RN  HG ALDHW
Subjt:  FSMAERLSAKESGSEMRNITHGLALDHW

A0A6J1J2F0 putative fasciclin-like arabinogalactan protein 203.8e-5569.87Show/hide
Query:  KNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVAKSNG
        KN FGEAI+TLRSNGYSSMALFLESQI+ F+NGQS MT+FAPSDD LA R+D+FTDYPSLY      CRILWNDL++LE+GT+LSTYS+G+ + +AKS+G
Subjt:  KNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVAKSNG

Query:  ILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
         L INGVAV YPNMY+N+WL++HGLLDVFS AER+SA+ES SE+    HG+A+ HW
Subjt:  ILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW

SwissProt top hitse value%identityAlignment
Q9FGW0 Putative fasciclin-like arabinogalactan protein 205.7e-1637.04Show/hide
Query:  NSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEK-GTKLSTYSKGFAISVAKSN
        N F  A   L S G+  +A FL  Q+   ++G  T +TVFAP D+ +      F+DY +++        +LW DL    K G+ L T  KG+ I ++ S 
Subjt:  NSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEK-GTKLSTYSKGFAISVAKSN

Query:  GILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAER
         IL++NGV +IYP++YVNDW+ VHG   +    E+
Subjt:  GILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAER

Arabidopsis top hitse value%identityAlignment
AT5G40940.1 putative fasciclin-like arabinogalactan protein 204.0e-1737.04Show/hide
Query:  NSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEK-GTKLSTYSKGFAISVAKSN
        N F  A   L S G+  +A FL  Q+   ++G  T +TVFAP D+ +      F+DY +++        +LW DL    K G+ L T  KG+ I ++ S 
Subjt:  NSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTDYPSLY------CRILWNDLMDLEK-GTKLSTYSKGFAISVAKSN

Query:  GILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAER
         IL++NGV +IYP++YVNDW+ VHG   +    E+
Subjt:  GILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGAGAAGAATTCATTTGGTGAAGCAATAGAAACCCTAAGATCTAATGGATATTCTTCAATGGCGTTGTTTCTTGAATCTCAGATTTTAAGATTTAGTAATGGTCA
GTCCACGATGACAGTCTTTGCTCCTTCAGATGATACATTGGCCGCTCGCATTGATGACTTTACCGATTATCCTTCTCTGTATTGTAGAATCTTATGGAATGATCTTATGG
ATCTTGAGAAAGGCACGAAGTTATCTACATATTCAAAAGGATTTGCAATTTCCGTTGCGAAATCAAACGGCATATTGATGATCAATGGAGTTGCAGTCATCTATCCTAAC
ATGTATGTGAACGATTGGCTGCTTGTTCATGGCCTCCTGGATGTTTTTTCTATGGCAGAGAGACTCTCAGCAAAGGAATCAGGCTCAGAAATGAGAAACATCACTCATGG
GTTGGCACTGGATCATTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGAGAAGAATTCATTTGGTGAAGCAATAGAAACCCTAAGATCTAATGGATATTCTTCAATGGCGTTGTTTCTTGAATCTCAGATTTTAAGATTTAGTAATGGTCA
GTCCACGATGACAGTCTTTGCTCCTTCAGATGATACATTGGCCGCTCGCATTGATGACTTTACCGATTATCCTTCTCTGTATTGTAGAATCTTATGGAATGATCTTATGG
ATCTTGAGAAAGGCACGAAGTTATCTACATATTCAAAAGGATTTGCAATTTCCGTTGCGAAATCAAACGGCATATTGATGATCAATGGAGTTGCAGTCATCTATCCTAAC
ATGTATGTGAACGATTGGCTGCTTGTTCATGGCCTCCTGGATGTTTTTTCTATGGCAGAGAGACTCTCAGCAAAGGAATCAGGCTCAGAAATGAGAAACATCACTCATGG
GTTGGCACTGGATCATTGGTAA
Protein sequenceShow/hide protein sequence
MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPN
MYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW