CuGenDBv2

Gene ID	CmoCh18G010010
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	Cmo_Chr18:10906944..10908455
RNA-Seq Expression	CmoCh18G010010
Synteny	CmoCh18G010010
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

RVW69506.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.9e-134

62.65

Show/hide

Query:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD
        MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL AKKKIGF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+D
Subjt:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD

Query:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR
        IA+GIIHAKTA +VWVDL DQFSQKNAPA+FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQRQ H++QREED+LMQ LMGLN+SYK VR
Subjt:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR

Query:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR
        SNILMMSPLPNVRQAYSL+VQEEMQRQV+SEPTENFSIA+AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDRCR KN S    
Subjt:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR

Query:  ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVA----------------------------GLGY
           +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA+ A+NH  SGN D++ N A                            GLG+
Subjt:  ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVA----------------------------GLGY

Query:  GEDDWLG
        GEDDWLG
Subjt:  GEDDWLG

XP_023511453.1 uncharacterized protein LOC111776274 [Cucurbita pepo subsp. pepo]

4.6e-157

98.62

Show/hide

Query:  MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ
        MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ
Subjt:  MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ

Query:  LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE
        LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTE  SIASAVQKKTIYSKFAKDK CEHCNKSGHTINECRILKFHCNFCDRRGHTE
Subjt:  LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE

Query:  DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG
        DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLR+IAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG
Subjt:  DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG

XP_023520712.1 uncharacterized protein LOC111784113 [Cucurbita pepo subsp. pepo]

2.9e-159

99.65

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Query:  MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ
        MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ
Subjt:  MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ

Query:  LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE
        LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE
Subjt:  LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE

Query:  DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG
        DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLR+IAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG
Subjt:  DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG

XP_023524327.1 uncharacterized protein LOC111788256 [Cucurbita pepo subsp. pepo]

7.1e-158

98.96

Show/hide

Query:  MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ
        MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ
Subjt:  MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ

Query:  LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE
        LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTE  SIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE
Subjt:  LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE

Query:  DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG
        DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLR+IAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG
Subjt:  DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG

XP_023536128.1 uncharacterized protein LOC111797374 [Cucurbita pepo subsp. pepo]

3.0e-156

97.92

Show/hide

Query:  MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ
        MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ
Subjt:  MIISWLTHSVEADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQ

Query:  LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE
        LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTE  SIASAVQKKTIYSKFAKDK CEHCNKSGHTINECRILKFHC FCDRRGHTE
Subjt:  LLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTE

Query:  DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG
        DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLR+IAQALSAINHHPSGNSDNH+NVAGLGYGEDDWLG
Subjt:  DRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG

TrEMBL top hits

e value

%identity

Alignment

A0A438GBE7 Retrovirus-related Pol polyprotein from transposon RE1

9.1e-135

62.65

Show/hide

Query:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD
        MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL AKKKIGF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+D
Subjt:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD

Query:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR
        IA+GIIHAKTA +VWVDL DQFSQKNAPA+FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQRQ H++QREED+LMQ LMGLN+SYK VR
Subjt:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR

Query:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR
        SNILMMSPLPNVRQAYSL+VQEEMQRQV+SEPTENFSIA+AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDRCR KN S    
Subjt:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR

Query:  ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVA----------------------------GLGY
           +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA+ A+NH  SGN D++ N A                            GLG+
Subjt:  ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVA----------------------------GLGY

Query:  GEDDWLG
        GEDDWLG
Subjt:  GEDDWLG

A0A438GFQ0 Retrovirus-related Pol polyprotein from transposon RE1

8.5e-133

66.49

Show/hide

Query:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD
        MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL AKKKIGF++GT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+D
Subjt:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD

Query:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR
        IA+GIIHAKTA +VWVDL DQFSQKNAPA+FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQRQ H++QREED+LMQ LMGLN+SYK VR
Subjt:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR

Query:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR
        SNILMMSPLPNVRQAYSL++QEEMQRQV+SEPTENFSIA+AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDRCR KN S    
Subjt:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR

Query:  ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGL
           +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA+ A+NH  SGN D + NVAGL
Subjt:  ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGL

A0A438GTA3 Retrotran_gag_3 domain-containing protein

9.4e-132

61.92

Show/hide

Query:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD
        MA S K+S  +   +D +HP YIHHSDQP + LVPIKLNG NYQSWSK+V+HAL AKKKIGF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+D
Subjt:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD

Query:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR
        IA+GIIH+KT  +VWVDL DQFSQKNAP +FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQ Q H++QREED+LMQ LMGLN+SYK +R
Subjt:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR

Query:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNS-GRT
        SNILMMSPLPNVRQAYSL+VQEEMQRQV+SEPTENFSIA+AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDRCR KN S  +T
Subjt:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNS-GRT

Query:  RQ--DNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVA----------------------------GLGY
        RQ    +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA+ A+NH  SGN D + N A                            GLG+
Subjt:  RQ--DNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVA----------------------------GLGY

Query:  GEDDWLG
        GEDDWLG
Subjt:  GEDDWLG

A0A438K345 Retrovirus-related Pol polyprotein from transposon RE1

3.2e-132

62.85

Show/hide

Query:  VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQV
        +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL AKKKIGF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH VE+DIA+GIIHAKTA +V
Subjt:  VDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTAHQV

Query:  WVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQ
        WVDL DQFSQKNAPA+FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQRQ H++QREED+LMQ LMGL++SYK VRSNILMMSPLPNVRQ
Subjt:  WVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQ

Query:  AYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR---QDNQHNNRGYR
        AYSL+VQEEMQRQV+SEPTENFSIA+AV +K       + K C+HCN+SGH ++ECR LKFHC FCD+RGHTEDRCR KN S       +  +   RG +
Subjt:  AYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR---QDNQHNNRGYR

Query:  SSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVA----------------------------GLGYGEDDWLG
          AN A  SQ  ++  S ++I  F++EQ++++AQA+ A+NH  SGN D + N A                            GLG+GEDDWLG
Subjt:  SSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVA----------------------------GLGYGEDDWLG

A5BNR5 Integrase catalytic domain-containing protein

5.5e-132

66.4

Show/hide

Query:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD
        MA S K+S  +   +D +HP YIHHSDQPG+ LVPIKLNG NYQSWSK+V+HAL  KKKIGF+DGT+EEPSQ+     FE WNQCNSMI+SWLTH+VE+D
Subjt:  MAESAKSS-FKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEAD

Query:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR
        IA+GIIHAKTA +VWVDL DQFSQKNAPA+FQIQ SIATMSQGTM ++ YFTK+KALWDELE YR+P TCNQRQ H++QREED+LMQ LMGLN+SYK VR
Subjt:  IAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVR

Query:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR
        SNILMMSPLPNVRQAYSL+VQEEMQRQV+SEPTENFSIA+AV  K       + K C+HCN+SGHTI+ECR LKFHC FCD+RGHTEDRCR KN S    
Subjt:  SNILMMSPLPNVRQAYSLLVQEEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTR

Query:  ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAG
           +  +   RG + SAN A  SQ  ++  S +++  F++EQ++++AQA+ A+NH  SGN D + N AG
Subjt:  ---QDNQHNNRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

3.6e-27

31.91

Show/hide

Query:  MAESAKSSFKISDVDLTHPYY----IHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSV
        MAE+ KS    SD D   PYY    IHH     +S+  +  +  NY +W       L   KK GFIDGT+ +P  D  S  ++ W QCN+M++ WL +S+
Subjt:  MAESAKSSFKISDVDLTHPYY----IHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSV

Query:  EADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRT-------PFTCNQRQIHIDQREEDKLMQLLM
           + + +++A+TAH++W DL   F       I+Q++  +AT+ QG  ++  YF KL  +W EL  Y            C   +   + RE+++  + LM
Subjt:  EADIAKGIIHAKTAHQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRT-------PFTCNQRQIHIDQREEDKLMQLLM

Query:  G--LNQSYKTVRSNILMMSPLPNVRQAYSLLVQEE
        G  LNQ ++ V + I+   P P++ +A++++   E
Subjt:  G--LNQSYKTVRSNILMMSPLPNVRQAYSLLVQEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGAATCAGCCAAATCCAGCTTCAAAATTTCGGATGTTGATTTAACACATCCGTACTATATTCATCACTCTGATCAGCCAGGATATTCACTTGTTCCAATCAAATT
AAATGGAGCAAATTACCAATCCTGGAGTAAATCAGTTATGCATGCTCTTATTGCCAAGAAGAAAATTGGCTTCATTGATGGCACAATTGAGGAACCGTCCCAAGATGCAA
ATTCAACCGAATTCGAACTCTGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTCCGTTGAAGCAGATATCGCTAAAGGCATTATTCACGCCAAGACAGCT
CATCAAGTGTGGGTTGATCTTCACGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGATGTCACAAGGAACCATGGCGCTGTC
AACATATTTCACCAAGCTCAAAGCACTTTGGGATGAACTGGAAGCATACCGCACACCATTTACCTGTAATCAACGTCAAATACATATTGACCAACGCGAAGAAGACAAGT
TGATGCAATTGCTCATGGGGCTTAATCAGTCTTATAAAACGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTACAA
GAAGAGATGCAGCGTCAGGTAACTTCCGAACCTACTGAGAATTTCTCGATTGCATCAGCAGTGCAAAAGAAAACAATATATTCAAAATTCGCCAAGGACAAAAAGTGTGA
ACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCACTGTAACTTTTGTGATAGAAGGGGCCATACAGAAGATCGGTGTCGACAGAAAAATA
ATTCTGGAAGGACAAGACAAGACAATCAACACAATAACCGTGGATATCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCC
ATTCCAAATTTTTCTTCTGAGCAATTACGAGAGATAGCACAAGCCTTATCTGCAATCAATCATCACCCTTCTGGTAATTCTGACAATCACGTCAATGTTGCAGGACTTGG
CTACGGGGAAGATGATTGGCTCGGGTAA

mRNA sequence

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Protein sequence

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MAESAKSSFKISDVDLTHPYYIHHSDQPGYSLVPIKLNGANYQSWSKSVMHALIAKKKIGFIDGTIEEPSQDANSTEFELWNQCNSMIISWLTHSVEADIAKGIIHAKTA
HQVWVDLHDQFSQKNAPAIFQIQNSIATMSQGTMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQREEDKLMQLLMGLNQSYKTVRSNILMMSPLPNVRQAYSLLVQ
EEMQRQVTSEPTENFSIASAVQKKTIYSKFAKDKKCEHCNKSGHTINECRILKFHCNFCDRRGHTEDRCRQKNNSGRTRQDNQHNNRGYRSSANMADVSQLNTEEQSPNS
IPNFSSEQLREIAQALSAINHHPSGNSDNHVNVAGLGYGEDDWLG

CmoCh18G010010 (gene) of Cucurbita moschata (Rifu) v1 genome