; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh18G010230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G010230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionVQ motif-containing protein 8
Genome locationCmo_Chr18:11039678..11040034
RNA-Seq ExpressionCmoCh18G010230
SyntenyCmoCh18G010230
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-6099.15Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPFFTPRSL
        MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCP FTPRSL
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPFFTPRSL

Query:  VNSLSPSFMEFLKGLPEF
        VNSLSPSFMEFLKGLPEF
Subjt:  VNSLSPSFMEFLKGLPEF

KGN52621.2 hypothetical protein Csa_008052 [Cucumis sativus]2.3e-2263.73Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPS-----------DNNDSSSVVTEED
        MSPPK   I+GPRP PLL+H HSR IRK   P QLR+P+IIYTHSPKIIHT PKDFMALVQRLTGC+PP     PS           DN+ SS V TEED
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPS-----------DNNDSSSVVTEED

Query:  SN
         N
Subjt:  SN

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]4.5e-2655.88Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNC-
        MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALVQRLTG +  PP  ++  +DN+ +S V +EED     SNC 
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNC-

Query:  ----------PFFTPRSLVNSLSPSFMEFLKGLPEF
                  PF +P + ++SLSPSFM+FLK LPEF
Subjt:  ----------PFFTPRSLVNSLSPSFMEFLKGLPEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]5.7e-2954.82Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC
        MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALVQRLTG +   PP+AD +  +N     NDSSSV+TEE  NC
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC

Query:  --------------------------PFFTPR--------------SLVNSLSPSFMEFLKGLPEF
                                  P FTP                L NSLSPSFMEFLKGLPEF
Subjt:  --------------------------PFFTPR--------------SLVNSLSPSFMEFLKGLPEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]2.6e-2650.93Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPN------------ADKAPSDNNDSSSVVTEE
        MSPPK   I+GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHTQPKDFMALVQRLTG +PP             +++  +DN+ SS + TEE
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPN------------ADKAPSDNNDSSSVVTEE

Query:  DSN-------------------------------CPFFTPRSLVNSLSPSFMEFLKGLPEF
        + N                                PF +P +L+NSLSPSFMEFLK LPEF
Subjt:  DSN-------------------------------CPFFTPRSLVNSLSPSFMEFLKGLPEF

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein1.5e-3058.22Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPS-----------DNNDSSSVVTEED
        MSPPK   I+GPRP PLL+H HSR IRK   P QLR+P+IIYTHSPKIIHT PKDFMALVQRLTGC+PP     PS           DN+ SS V TEED
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPS-----------DNNDSSSVVTEED

Query:  -----SNC------------PFFTPRSLVNSLSPSFMEFLKGLPEF
             SNC            PF +P  L +SLSPSFM+FLK LPEF
Subjt:  -----SNC------------PFFTPRSLVNSLSPSFMEFLKGLPEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like2.2e-2655.88Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNC-
        MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALVQRLTG +  PP  ++  +DN+ +S V +EED     SNC 
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNC-

Query:  ----------PFFTPRSLVNSLSPSFMEFLKGLPEF
                  PF +P + ++SLSPSFM+FLK LPEF
Subjt:  ----------PFFTPRSLVNSLSPSFMEFLKGLPEF

A0A5D3CFH5 VQ motif-containing protein 82.2e-2655.88Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNC-
        MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALVQRLTG +  PP  ++  +DN+ +S V +EED     SNC 
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNC-

Query:  ----------PFFTPRSLVNSLSPSFMEFLKGLPEF
                  PF +P + ++SLSPSFM+FLK LPEF
Subjt:  ----------PFFTPRSLVNSLSPSFMEFLKGLPEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic2.8e-2954.82Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC
        MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALVQRLTG +   PP+AD +  +N     NDSSSV+TEE  NC
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC

Query:  --------------------------PFFTPR--------------SLVNSLSPSFMEFLKGLPEF
                                  P FTP                L NSLSPSFMEFLKGLPEF
Subjt:  --------------------------PFFTPR--------------SLVNSLSPSFMEFLKGLPEF

W9RYA3 VQ domain-containing protein7.0e-1738.1Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADK----------------------
        MSP K   I+G RP PL ++K S TI KPS      PPQ  +PVIIYTHSP+IIHT+P++FMA+VQ LTG S  N +K                      
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADK----------------------

Query:  ---------APSDNNDSSSVVTEEDSN---------------CPFFTPRSLVNS--------------------LSPSFMEFLKGLPEF
                 A SDNN+SSSV+T+E +N                P FTP    +                     +SPSF+EF+KGLPE+
Subjt:  ---------APSDNNDSSSVVTEEDSN---------------CPFFTPRSLVNS--------------------LSPSFMEFLKGLPEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B2.0e-0533.61Show/hide
Query:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS
        P+ R   GP+P PL +   S  I K  P         PPQ  +           PV IYT +P+IIHT P +FM LVQRLTG        + + ++ SSS
Subjt:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS

Query:  VVTEEDSNCPFFTPRSLVN
            +D++    T   L++
Subjt:  VVTEEDSNCPFFTPRSLVN

Q8LGD5 Protein MKS11.2e-0847.89Show/hide
Query:  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS
        I GPRP PL +HK S  I+KP            PPP + R PV+IY  SPK++H    +FM +VQRLTG S
Subjt:  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS

Q9CA36 VQ motif-containing protein 8, chloroplastic1.4e-0950Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE
        M P +   I+G RP  L L   S TI+K S     P P  R  PVIIY HSPK+IHT+ +DFMALVQRLTG    +     + +  SSSVVTEE
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE

Q9LS54 VQ motif-containing protein 207.3e-1153.73Show/hide
Query:  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNAD
        P PP L ++K S  I+KP  P         R PVIIYTH+P+IIHT PKDFMALVQ+LTG +  + D
Subjt:  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNAD

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding1.5e-0633.61Show/hide
Query:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS
        P+ R   GP+P PL +   S  I K  P         PPQ  +           PV IYT +P+IIHT P +FM LVQRLTG        + + ++ SSS
Subjt:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS

Query:  VVTEEDSNCPFFTPRSLVN
            +D++    T   L++
Subjt:  VVTEEDSNCPFFTPRSLVN

AT1G21326.1 VQ motif-containing protein2.7e-0836.97Show/hide
Query:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS
        P+ R I GPRP PL +   S  I K  P         PPQ  +           PVIIYT SP+IIHT P +FM LVQRLTG        + + ++ SSS
Subjt:  PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSS

Query:  VVTEEDSNCPFFTPRSLVN
            +D++    T   L++
Subjt:  VVTEEDSNCPFFTPRSLVN

AT1G68450.1 VQ motif-containing protein9.7e-1150Show/hide
Query:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE
        M P +   I+G RP  L L   S TI+K S     P P  R  PVIIY HSPK+IHT+ +DFMALVQRLTG    +     + +  SSSVVTEE
Subjt:  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE

AT3G18360.1 VQ motif-containing protein5.2e-1253.73Show/hide
Query:  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNAD
        P PP L ++K S  I+KP  P         R PVIIYTH+P+IIHT PKDFMALVQ+LTG +  + D
Subjt:  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNAD

AT3G18690.1 MAP kinase substrate 18.2e-1047.89Show/hide
Query:  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS
        I GPRP PL +HK S  I+KP            PPP + R PV+IY  SPK++H    +FM +VQRLTG S
Subjt:  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDFMALVQRLTGCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCG
CCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACGCCGACAAAG
CGCCGTCCGACAACAATGATTCCTCCTCGGTTGTGACGGAGGAGGACAGTAATTGTCCCTTCTTCACTCCTCGTTCTTTGGTTAATTCCTTGTCCCCTTCTTTCATGGAG
TTTCTCAAAGGGCTGCCGGAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCG
CCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACGCCGACAAAG
CGCCGTCCGACAACAATGATTCCTCCTCGGTTGTGACGGAGGAGGACAGTAATTGTCCCTTCTTCACTCCTCGTTCTTTGGTTAATTCCTTGTCCCCTTCTTTCATGGAG
TTTCTCAAAGGGCTGCCGGAATTTTAA
Protein sequenceShow/hide protein sequence
MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPFFTPRSLVNSLSPSFME
FLKGLPEF