; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh18G010530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G010530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionATP-dependent Clp protease adapter protein CLPS1
Genome locationCmo_Chr18:11187645..11190771
RNA-Seq ExpressionCmoCh18G010530
SyntenyCmoCh18G010530
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030163 - protein catabolic process (biological process)
GO:0005840 - ribosome (cellular component)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR003769 - Adaptor protein ClpS, core
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
IPR022935 - ATP-dependent Clp protease adaptor protein ClpS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013044.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.9e-8499.38Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGR GGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

XP_022945945.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita moschata]5.3e-86100Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

XP_022968529.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima]1.3e-8498.12Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLALSPNHVFNPKPG+RSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAHCNG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

XP_023542987.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita pepo subsp. pepo]2.6e-8598.75Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLALSPNHVFNPKPG+RSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAHCNG+SLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

XP_038891525.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida]4.0e-7893.12Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLALSPNHVFNPKPG+RSSVCKGLCS   ASVVKSA TAGR GGGLLERPVIEKATPGRESEFDLR+SRK TPPYRVILHNDDFN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAHCNG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

TrEMBL top hitse value%identityAlignment
A0A1S3BG61 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X15.3e-7690.62Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLA+SPNHVFNPKPG+RSS+CKGLC    ASVVKSA TAGR GGGLLERPVIEKATPGRESEFD+RRSRK TPPYRVILHNDDFN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAH NG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

A0A5A7STJ9 ATP-dependent Clp protease adapter protein CLPS15.3e-7690.62Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLA+SPNHVFNPKPG+RSS+CKGLC    ASVVKSA TAGR GGGLLERPVIEKATPGRESEFD+RRSRK TPPYRVILHNDDFN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAH NG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

A0A6J1DBL1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic1.4e-7690Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLALSPNHVFNP+PG+++ VC+GLCS+L A++VKSATTAG+ GGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAH NG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

A0A6J1G2F4 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like2.5e-86100Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

A0A6J1HZX0 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like6.3e-8598.12Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        MEIAICGKLALSPNHVFNPKPG+RSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAHCNG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC

SwissProt top hitse value%identityAlignment
A0A2K3CNL6 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic1.6e-2148.62Show/hide
Query:  GGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLS
        GG+++ P     T  ++    + RS+K  P Y+V+LHND++N+REYVV+VL+KV+  +T+D+AV  MQEAH  G++LV+ C Q +AE +C  LR NGL S
Subjt:  GGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLS

Query:  SIEPASGGC
        +IEP  GGC
Subjt:  SIEPASGGC

Q31QE7 ATP-dependent Clp protease adapter protein ClpS4.4e-1959.49Show/hide
Query:  RKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEP
        RK  P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    AE +C QL+ +GL SSIEP
Subjt:  RKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEP

Q3AUR5 ATP-dependent Clp protease adapter protein ClpS4.3e-1443.62Show/hide
Query:  TPGRESEFDL--RRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEP
        +PG  +  D    R RK +P Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ LVI+C    AE +C  L+  GL SSIEP
Subjt:  TPGRESEFDL--RRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEP

Q5N3U1 ATP-dependent Clp protease adapter protein ClpS2.0e-1657.53Show/hide
Query:  RKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGL
        RK  P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    AE +C QL+ +GL
Subjt:  RKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGL

Q9SX29 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic5.7e-5967.92Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        ME AICG+LAL+P+ +FN K G++  V KG C      +  S + A   GGG+L++P+IEK TPGRESEFDLR+S+K  PPYRVILHND+FN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC
        LMKVIPGMT+DNAVNIMQEAH NG+++VI+CAQADAE+HC QLRGNGLLSS+EP  GGC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC

Arabidopsis top hitse value%identityAlignment
AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein4.0e-6067.92Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        ME AICG+LAL+P+ +FN K G++  V KG C      +  S + A   GGG+L++P+IEK TPGRESEFDLR+S+K  PPYRVILHND+FN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC
        LMKVIPGMT+DNAVNIMQEAH NG+++VI+CAQADAE+HC QLRGNGLLSS+EP  GGC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC

AT1G68660.2 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein4.7e-4052.83Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV
        ME AICG+LAL+P+ +FN K G++  V KG C      +  S + A   GGG+L++P+IEK TPGRESEFDLR+S+K  PPYRVILHND+FN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC
        LMK                              ADAE+HC QLRGNGLLSS+EP  GGC
Subjt:  LMKVIPGMTLDNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTGCGATTTGCGGCAAATTAGCTCTCTCACCCAACCATGTCTTCAACCCCAAACCAGGGGAGAGAAGTTCTGTCTGTAAAGGGCTATGCTCAACCCTTTGTGC
ATCCGTTGTTAAATCAGCAACAACAGCAGGAAGAGGAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCCACTCCTGGAAGAGAATCTGAGTTTGATTTGAGGA
GATCAAGGAAAACGACGCCACCATACCGTGTGATTCTGCATAACGACGACTTCAACAGACGAGAATACGTCGTTCAAGTCCTGATGAAAGTGATTCCTGGAATGACACTG
GACAATGCTGTTAACATCATGCAAGAAGCTCACTGCAATGGCATGTCACTGGTGATCATTTGTGCGCAGGCTGATGCTGAAGAACACTGCACGCAGCTCAGAGGCAATGG
GCTGTTGAGTTCAATCGAACCAGCGAGTGGCGGGTGCTGCTGA
mRNA sequenceShow/hide mRNA sequence
CTCTGAAAACGAATCAGTCCACTTCCATTTTTCCTATTTTATCCTTCGAATTTTGTAATCTTTTGAAGAAATTAGCAGAATTGTTCCTCATCGGAACCGATTTCCGCTTC
AGATTGACAAGAAAAGAAGCCATGGAGATTGCGATTTGCGGCAAATTAGCTCTCTCACCCAACCATGTCTTCAACCCCAAACCAGGGGAGAGAAGTTCTGTCTGTAAAGG
GCTATGCTCAACCCTTTGTGCATCCGTTGTTAAATCAGCAACAACAGCAGGAAGAGGAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCCACTCCTGGAAGAG
AATCTGAGTTTGATTTGAGGAGATCAAGGAAAACGACGCCACCATACCGTGTGATTCTGCATAACGACGACTTCAACAGACGAGAATACGTCGTTCAAGTCCTGATGAAA
GTGATTCCTGGAATGACACTGGACAATGCTGTTAACATCATGCAAGAAGCTCACTGCAATGGCATGTCACTGGTGATCATTTGTGCGCAGGCTGATGCTGAAGAACACTG
CACGCAGCTCAGAGGCAATGGGCTGTTGAGTTCAATCGAACCAGCGAGTGGCGGGTGCTGCTGAACTTCTTCATCCACTGGGTCATACGTTTATGGTGTATCAAGTTAGT
CTTCATAACCAAAGGCATGGAGATAGGTAGGAAACTGGTATAATATAAGTATTGCACAACTCTTACTATATTTTCTTTGTTTTTGGAGTAAAAAAAAAAAACTTTTATTT
TTTA
Protein sequenceShow/hide protein sequence
MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTL
DNAVNIMQEAHCNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC