CuGenDBv2

Gene ID	CmoCh18G011060
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Protein Ycf2
Genome location	Cmo_Chr18:11492932..11496525
RNA-Seq Expression	CmoCh18G011060
Synteny	CmoCh18G011060
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

QWV60883.1 hypothetical protein RF2 [Cucurbita ficifolia]

1.2e-16

78.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG  LGLGSS+TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

YP_009447494.1 Ycf2 [Cucurbita maxima]

1.2e-16

78.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG  LGLGSS+TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

YP_009447579.1 Ycf2 [Cucurbita moschata]

1.2e-16

78.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG  LGLGSS+TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

YP_009505123.1 Ycf2 [Cucurbita pepo]

1.2e-16

78.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG  LGLGSS+TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

YP_009680923.1 hypothetical protein Ycf2 [Mucuna macrocarpa]

2.2e-15

76.67

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEGV   +GSS+TEKDCS+FDNDRVTLLLR+EPRNPLNMIQNGSYSI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

TrEMBL top hits

e value

%identity

Alignment

A0A2H4T233 Protein Ycf2

5.6e-17

78.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG  LGLGSS+TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

A0A2H4T2B6 Protein Ycf2

5.6e-17

78.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG  LGLGSS+TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

A0A344AXU5 Protein Ycf2

5.6e-17

78.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG  LGLGSS+TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

A0A510BVN5 Protein Ycf2

1.1e-15

76.67

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEGV   +GSS+TEKDCS+FDNDRVTLLLR+EPRNPLNMIQNGSYSI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

A0A6M8PQD0 Protein Ycf2

3.1e-15

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG    +GSS+TEKDCS+FDNDRVTLLLR+EPRNPLNMIQNGSYSI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

SwissProt top hits

e value

%identity

Alignment

A4GGE1 Protein Ycf2

2.0e-16

71.67

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG    +GSS+TEKDCS+FD DRVTLLLR+EPRNPLN IQNGSYSI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

A6MM80 Protein Ycf2

7.7e-16

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG    +GSS+TEKDCS+FDNDRVTLLLR+EPRNPL+M+QNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

Q09FY5 Protein Ycf2

2.7e-16

71.67

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEGV   +GSS+TEKDCS+FDNDRVTLLLR+EPRNPL+M+QNGS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

Q2PMM5 Protein Ycf2

4.1e-17

73.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG    +GSS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

Q2QD30 Protein Ycf2

3.5e-16

73.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEVEG     GSS TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI   +F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.1e-14

63.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEV+G    +GSS+TEKDCS+FDNDRVTLL R+EPR+PL M+Q+GS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.1e-14

63.33

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Query:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF
        +HGLLEV+G    +GSS+TEKDCS+FDNDRVTLL R+EPR+PL M+Q+GS SI    F++
Subjt:  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF

Sequences

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CDS sequence

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ATGCATTATTTATGGCCCTTTTCTACAGGGAAACCCAAATTCATTAAATCCGTCCTCCGTGAACGCTCTTTAACTCGAGTGAGAGAAGCCAGGTTAAAACAACTAACCCT
GGTTACATGCCGACCCACTCTCTTGCTCTGGCCTTTCAGATTCGAACACTCTGGAAGGAATGGTCACCTCGAATTGTGGGACACCTGGTTTCATCAGCGACCGGGCCGGG
CGGGTTTTCTTATTTTGGGTTTGCCCTTTCGAATCTGTAGTTCTCTGTACTACCCAGTTTCCTGCCCCAATCTGACCGATGCTGCCAATTCAAGACACGATAATCTCACT
AGTAATTCCAAAATTTTATTTCCTACGTGCCGAAAAGTGGAAGGCCCAAGGCCCAAGGCCCATTATTGCAAGCAAAACAATATATCGAAAATATTTAATTTTCTGAATAT
TCATGGCCTATTAGAAGTAGAAGGCGTTCGGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGGCCG
AACCCAGAAATCCCTTAAATATGATACAAAATGGATCTTATTCTATCAGGGTAGTCATGTTCATGTTTGTTCGATAA

mRNA sequence

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Protein sequence

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MHYLWPFSTGKPKFIKSVLRERSLTRVREARLKQLTLVTCRPTLLLWPFRFEHSGRNGHLELWDTWFHQRPGRAGFLILGLPFRICSSLYYPVSCPNLTDAANSRHDNLT
SNSKILFPTCRKVEGPRPKAHYCKQNNISKIFNFLNIHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMFVR

CmoCh18G011060 (gene) of Cucurbita moschata (Rifu) v1 genome