CuGenDBv2

Gene ID	CmoCh18G011930
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ubiquitin-conjugating enzyme E2 2
Genome location	Cmo_Chr18:11960465..11964570
RNA-Seq Expression	CmoCh18G011930
Synteny	CmoCh18G011930
Gene Ontology terms	GO:0012505 - endomembrane system (cellular component)
InterPro domains	IPR000608 - Ubiquitin-conjugating enzyme E2 IPR016135 - Ubiquitin-conjugating enzyme/RWD-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4360874.1 hypothetical protein F8388_020027 [Cannabis sativa]

2.9e-22

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPT                  SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

KAF4360876.1 hypothetical protein F8388_020029 [Cannabis sativa]

2.9e-22

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPT                  SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

KAF4391873.1 hypothetical protein G4B88_011516 [Cannabis sativa]

2.9e-22

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPT                  SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

KAG6487228.1 hypothetical protein ZIOFF_055813 [Zingiber officinale]

2.8e-25

96.55

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPTSLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPTSLLCDPNPNSPANSEAARMFSENKREYNR++
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPTSLLCDPNPNSPANSEAARMFSENKREYNRRI

THG22601.1 hypothetical protein TEA_013610 [Camellia sinensis var. sinensis]

1.5e-29

52.03

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Query:  DFSFISFLDLSGSPEVLAALAGEDVYFCKEETDERLQEVAARSACGHQWPDDTPWDGGTFKLTLQFTEDYPNKPPT------------------------
        +F F+  L+  G         G +V  CKEE DER QEVA R +C +Q PDDTPWDGGTFKLTLQFTEDYPNKPPT                        
Subjt:  DFSFISFLDLSGSPEVLAALAGEDVYFCKEETDERLQEVAARSACGHQWPDDTPWDGGTFKLTLQFTEDYPNKPPT------------------------

Query:  -----------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
                         SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  -----------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVV8 UBC core domain-containing protein

4.1e-22

71.25

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT----------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPT                      SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT----------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

A0A4S4EZQ4 UBC core domain-containing protein

7.0e-30

52.03

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Query:  DFSFISFLDLSGSPEVLAALAGEDVYFCKEETDERLQEVAARSACGHQWPDDTPWDGGTFKLTLQFTEDYPNKPPT------------------------
        +F F+  L+  G         G +V  CKEE DER QEVA R +C +Q PDDTPWDGGTFKLTLQFTEDYPNKPPT                        
Subjt:  DFSFISFLDLSGSPEVLAALAGEDVYFCKEETDERLQEVAARSACGHQWPDDTPWDGGTFKLTLQFTEDYPNKPPT------------------------

Query:  -----------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
                         SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  -----------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

A0A7J6ER13 UBC core domain-containing protein

1.4e-22

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPT                  SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

A0A7J6ERE1 UBC core domain-containing protein

1.4e-22

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPT                  SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

A0A7J6H9A8 UBC core domain-containing protein

1.4e-22

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPT                  SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

SwissProt top hits

e value

%identity

Alignment

P25865 Ubiquitin-conjugating enzyme E2 1

1.3e-20

53.54

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKL+LQF+EDYPNKPPT                                         SLLCDPNPNSPANSEAARM+SE+KREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

P25866 Ubiquitin-conjugating enzyme E2 2

8.9e-22

55.56

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKLTLQFTEDYPNKPPT                                         SLLCDPNPNSPANSEAARM+SENKREYNR++
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

P35130 Ubiquitin-conjugating enzyme E2 2

1.5e-21

55.56

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKL+LQF+EDYPNKPPT                                         SLLCDPNPNSPANSEAARMFSENKREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

P42745 Ubiquitin-conjugating enzyme E2 2

5.7e-21

54.55

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKL+LQF+EDYPNKPPT                                         SLLCDPNPNSPANSEAARMFSE+KREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

P42746 Ubiquitin-conjugating enzyme E2 3

6.3e-20

50.5

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPP-----------------------------------------TSLLCDPNPNSPANSEAARMFSENKREYNRRII
        P+DTPWDGGTFKLTL FTEDYPNKPP                                          SLLCDPNP+SPAN+EAAR+FSENKREYNR++I
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPP-----------------------------------------TSLLCDPNPNSPANSEAARMFSENKREYNRRII

Query:  Q
        +
Subjt:  Q

Arabidopsis top hits

e value

%identity

Alignment

AT1G14400.1 ubiquitin carrier protein 1

9.1e-22

53.54

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKL+LQF+EDYPNKPPT                                         SLLCDPNPNSPANSEAARM+SE+KREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

AT1G14400.2 ubiquitin carrier protein 1

9.1e-22

53.54

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKL+LQF+EDYPNKPPT                                         SLLCDPNPNSPANSEAARM+SE+KREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

AT1G36340.1 ubiquitin-conjugating enzyme 31

2.9e-04

26.21

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPP-----------------------------------------TSLLCDPNPNSPANSEAARMFSENKREYNRRII
        PD TP++GG F L+++F  DYP KPP                                           LL  PNP+ P   E  ++F  N+ ++++R  
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPP-----------------------------------------TSLLCDPNPNSPANSEAARMFSENKREYNRRII

Query:  QFT
        +FT
Subjt:  QFT

AT2G02760.1 ubiquiting-conjugating enzyme 2

4.1e-22

54.55

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI
        PDDTPWDGGTFKL+LQF+EDYPNKPPT                                         SLLCDPNPNSPANSEAARMFSE+KREYNRR+
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPPT-----------------------------------------SLLCDPNPNSPANSEAARMFSENKREYNRRI

AT5G62540.1 ubiquitin-conjugating enzyme 3

4.5e-21

50.5

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Query:  PDDTPWDGGTFKLTLQFTEDYPNKPP-----------------------------------------TSLLCDPNPNSPANSEAARMFSENKREYNRRII
        P+DTPWDGGTFKLTL FTEDYPNKPP                                          SLLCDPNP+SPAN+EAAR+FSENKREYNR++I
Subjt:  PDDTPWDGGTFKLTLQFTEDYPNKPP-----------------------------------------TSLLCDPNPNSPANSEAARMFSENKREYNRRII

Query:  Q
        +
Subjt:  Q

Sequences

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CDS sequence

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ATGGGAGGCCAAGGCGGCGTCTTGTTAAGAATTTGGGATTTCTATTTCGCTCCTTCTTCCTCCTATCGTGTTACGGTCGCCGGTGAAAATCTCTTGTCGACTACTCCTAA
AACTCGGGATTTTTCTTTCATTTCGTTTCTGGACCTATCGGGATCGCCTGAAGTTCTCGCCGCGCTAGCCGGTGAGGATGTCTACTTCTGCAAGGAAGAGACTGATGAGA
GACTTCAAGAGGTTGCAGCAAGATCCGCCTGCGGGCATCAGTGGCCTGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACTCTTCAGTTCACGGAGGATTATCCA
AATAAGCCACCGACGTCGTTGCTGTGCGACCCGAATCCAAACTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGTGAGAACAAGCGTGAGTACAACAGGAGAATCAT
CCAGTTCACTTGTGGATGTGATCGGCCTACCGGTGATGACTTGCAGCAAAATGGCACCAAATTGAAAGATGTCTTCCTTCTCCGGATTCCCACTTCTGCATTTAGAAATA
GATTAGATCATTGGATTGCTGCAGAAAGAAGAATCTAA

mRNA sequence

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Protein sequence

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MGGQGGVLLRIWDFYFAPSSSYRVTVAGENLLSTTPKTRDFSFISFLDLSGSPEVLAALAGEDVYFCKEETDERLQEVAARSACGHQWPDDTPWDGGTFKLTLQFTEDYP
NKPPTSLLCDPNPNSPANSEAARMFSENKREYNRRIIQFTCGCDRPTGDDLQQNGTKLKDVFLLRIPTSAFRNRLDHWIAAERRI

CmoCh18G011930 (gene) of Cucurbita moschata (Rifu) v1 genome