CuGenDBv2

Gene ID	CmoCh18G012330
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RAB6-interacting golgin
Genome location	Cmo_Chr18:12188055..12191354
RNA-Seq Expression	CmoCh18G012330
Synteny	CmoCh18G012330
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6574142.1 hypothetical protein SDJN03_28029, partial [Cucurbita argyrosperma subsp. sororia]

8.7e-131

99.62

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTE TGAKANESARIQAV
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
        SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

KAG7013196.1 hypothetical protein SDJN02_25953 [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-130

99.23

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTE TGAKANESARIQAV
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
        SGDAPVVNGQNQKPSSETEVRGK+KNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

XP_022945967.1 uncharacterized protein LOC111450054 [Cucurbita moschata]

1.8e-131

100

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
        SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

XP_022968531.1 uncharacterized protein LOC111467736 [Cucurbita maxima]

5.7e-130

99.23

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTM +AQNSRVADSSGVATSTETTGAKANESARIQAV
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
        SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

XP_023541472.1 uncharacterized protein LOC111801645 [Cucurbita pepo subsp. pepo]

3.7e-129

98.85

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALE LRKKIEMSTERIHAAKLKEEQAKKA
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMG+AQNSRVADSSGVATSTETTGAKANESARIQAV
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
        SGDAPVVNGQNQK SSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8J1 RAB6-interacting golgin

4.3e-91

78.38

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDP LLP                   IIEEG LQLRK IDEN SKIRDVERELA LTMEMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK 
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQ+EEA KQKLC+DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    +  TMG AQNSRV+DSSGVAT+TE TGAK NE+   Q  
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
        S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

A0A5D3DFA0 RAB6-interacting golgin

2.3e-105

85.33

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDP LLPEIGPDGLAREAPVIAYTEKIIEEG LQLRK IDEN SKIRDVERELA LTMEMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK 
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQDEEA KQKLC+DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    + + MG AQNSRV+DSS VAT+TE TGAK NE+   Q  
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
        S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

A0A6J1CI49 uncharacterized protein LOC111011714

4.6e-101

82.13

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        M S+P LLPEIGPDGLA E+PVIAYTEKIIEE +LQLRKYI+ENYSKIRDVERELA LTMEMKLTSGPKKAALELLRKKIEM+TERI AAKLKEEQAK+A
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTET-TGAKANESARIQA
        WEAASKVVQDEE IKQKLC+DLNHLVQES+NSQLTRLEELKRRMEALN  RVSTSVS    +G+T+G AQNSRV+DSSG  TSTET   A+ANESA  Q 
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTET-TGAKANESARIQA

Query:  VS--GDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
         +  G  PV+NGQNQKP SE E RGKKKNQ HGRGKGIGAVPKGRSS DSGWTGSGFDVDGRV
Subjt:  VS--GDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

A0A6J1G2D4 uncharacterized protein LOC111450054

8.5e-132

100

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
        SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

A0A6J1HV58 uncharacterized protein LOC111467736

2.7e-130

99.23

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTM +AQNSRVADSSGVATSTETTGAKANESARIQAV
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
        SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV
Subjt:  SGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51840.1 unknown protein

3.5e-69

61.54

Show/hide

Query:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA
        M SDP L  EIG DGLAREAPVIAYTEKIIEE ++QLRKYI+ENY+KIRDVERE   L+ME+KLT+GPKKAA+E LRKKIE+STERIHAAKLKEE+A+KA
Subjt:  MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKA

Query:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV
        +EAASKVV+DEEA KQ LC+DLN LVQ+S+N+Q  RLEELKRR+EALN NR STS+ QV QE +T        V DS+  A + +T   K   +      
Subjt:  WEAASKVVQDEEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAV

Query:  SGDAPVVNGQNQKP-SSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
         G+        Q+P ++E E + KKK Q  GRG+GIG + KGR     GWTG+GFDVDGR
Subjt:  SGDAPVVNGQNQKP-SSETEVRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTTCCGATCCCTTCCTTTTGCCTGAGATTGGTCCTGATGGCCTTGCCAGGGAAGCTCCTGTAATTGCCTACACTGAAAAGATAATCGAGGAAGGGCGTCTTCAATT
GAGAAAATACATTGATGAGAATTATTCTAAGATTCGAGATGTTGAACGAGAGTTGGCAGAGCTTACAATGGAGATGAAACTCACATCTGGTCCAAAAAAAGCAGCACTCG
AACTTCTGCGGAAGAAAATAGAGATGTCAACGGAAAGAATACATGCAGCCAAGTTGAAGGAAGAACAAGCAAAGAAGGCTTGGGAAGCAGCGTCGAAGGTAGTGCAGGAC
GAGGAAGCAATTAAGCAAAAGCTATGTGATGACTTGAATCATCTGGTTCAAGAAAGCAATAATTCGCAGTTGACGAGGCTCGAAGAACTAAAACGAAGAATGGAAGCTTT
GAATTCAAACCGAGTATCGACCTCTGTTTCTCAAGTTACACAAGAAGGCCAAACAATGGGGAATGCTCAGAACAGCAGAGTTGCAGATTCTTCTGGAGTTGCTACATCAA
CAGAAACAACAGGTGCAAAAGCAAATGAAAGTGCACGTATTCAAGCAGTCAGTGGTGATGCTCCAGTGGTGAATGGCCAAAATCAAAAGCCATCTTCTGAGACAGAAGTA
AGAGGGAAAAAGAAAAACCAGTTTCATGGAAGAGGGAAGGGAATTGGAGCAGTGCCTAAAGGAAGAAGCTCTGCAGACTCTGGGTGGACTGGCTCTGGGTTTGATGTGGA
TGGTAGGGTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQD
EEAIKQKLCDDLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEV
RGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRV

CmoCh18G012330 (gene) of Cucurbita moschata (Rifu) v1 genome