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CmoCh18G012440 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G012440
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDihydrodipicolinate reductase-like protein CRR1 chloroplastic
Genome locationCmo_Chr18:12260590..12262929
RNA-Seq ExpressionCmoCh18G012440
SyntenyCmoCh18G012440
Gene Ontology termsGO:0009089 - lysine biosynthetic process via diaminopimelate (biological process)
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase (molecular function)
InterPro domainsIPR023940 - Dihydrodipicolinate reductase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574155.1 Dihydrodipicolinate reductase-like protein CRR1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.2e-3895.51Show/hide
Query:  SKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT---DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA
        SKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT   DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML+KIEFECTA
Subjt:  SKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT---DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA

KAG7013209.1 Dihydrodipicolinate reductase-like protein CRR1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-4472.34Show/hide
Query:  LACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVD-------------------------------
        LACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVD                               
Subjt:  LACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVD-------------------------------

Query:  -TDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEK
         TDVPSSDASQIANNLSNLGQNCNREDISTGDW     + K
Subjt:  -TDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEK

XP_022945342.1 uncharacterized protein LOC111449605 [Cucurbita moschata]9.0e-7388.55Show/hide
Query:  MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVK
        MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVK
Subjt:  MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVK

Query:  QATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA
        Q                   DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA
Subjt:  QATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA

XP_022968396.1 uncharacterized protein LOC111467650 [Cucurbita maxima]1.3e-3977.97Show/hide
Query:  LACSFPLQCIK--NSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDIST
        LACSFPLQC+K    SNPQSHLEFASL+SNIKSKETGVVDFT+PSKVYENVKQ                   DVPSSDASQIANNLSNLGQNCNREDIST
Subjt:  LACSFPLQCIK--NSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDIST

Query:  GDWQRDKMLEKIEFECTA
        GDWQRDKMLEKIEFECTA
Subjt:  GDWQRDKMLEKIEFECTA

XP_023542860.1 uncharacterized protein LOC111802654 [Cucurbita pepo subsp. pepo]6.5e-3977.97Show/hide
Query:  LACSFPLQCIK--NSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDIST
        LACSFPLQC+K    SNP SHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQ                   DVPSSDASQIANNL NLGQNCNREDIST
Subjt:  LACSFPLQCIK--NSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDIST

Query:  GDWQRDKMLEKIEFECTA
        GDWQRDKMLEKIEFECTA
Subjt:  GDWQRDKMLEKIEFECTA

TrEMBL top hitse value%identityAlignment
A0A0A0L5T6 Uncharacterized protein1.6e-1445.59Show/hide
Query:  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D
        L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT                                                    D
Subjt:  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D

Query:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML
        +PSSDA+QIANNLSNLGQ  NREDIST    R +++
Subjt:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML

A0A5A7SWS8 Dihydrodipicolinate reductase-like protein CRR11.6e-1445.59Show/hide
Query:  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D
        L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT                                                    D
Subjt:  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D

Query:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML
        +PSSDA+QIANNLSNLGQ  NREDIST    R +++
Subjt:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML

A0A5D3DF17 Dihydrodipicolinate reductase-like protein CRR11.6e-1445.59Show/hide
Query:  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D
        L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT                                                    D
Subjt:  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D

Query:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML
        +PSSDA+QIANNLSNLGQ  NREDIST    R +++
Subjt:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML

A0A6J1G0N1 uncharacterized protein LOC1114496054.4e-7388.55Show/hide
Query:  MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVK
        MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVK
Subjt:  MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVK

Query:  QATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA
        Q                   DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA
Subjt:  QATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA

A0A6J1HTE5 uncharacterized protein LOC1114676506.4e-4077.97Show/hide
Query:  LACSFPLQCIK--NSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDIST
        LACSFPLQC+K    SNPQSHLEFASL+SNIKSKETGVVDFT+PSKVYENVKQ                   DVPSSDASQIANNLSNLGQNCNREDIST
Subjt:  LACSFPLQCIK--NSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDIST

Query:  GDWQRDKMLEKIEFECTA
        GDWQRDKMLEKIEFECTA
Subjt:  GDWQRDKMLEKIEFECTA

SwissProt top hitse value%identityAlignment
Q9FJ82 Dihydrodipicolinate reductase-like protein CRR1, chloroplastic1.6e-1138.97Show/hide
Query:  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D
        L S  + KE GVV DFT PS VYENVKQAT+FGM+S VYVP IK +T                                                    D
Subjt:  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D

Query:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML
        +PS +A QIANN+SNLGQ  NRED ST    R +++
Subjt:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML

Arabidopsis top hitse value%identityAlignment
AT5G52100.1 Dihydrodipicolinate reductase, bacterial/plant1.1e-1238.97Show/hide
Query:  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D
        L S  + KE GVV DFT PS VYENVKQAT+FGM+S VYVP IK +T                                                    D
Subjt:  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT----------------------------------------------------D

Query:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML
        +PS +A QIANN+SNLGQ  NRED ST    R +++
Subjt:  VPSSDASQIANNLSNLGQNCNREDISTGDWQRDKML


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAA
GAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTT
CTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAG
GTTTATGTTCCTGGAATAAAAGTTGACACAGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTC
AACCGGAGACTGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAA
GAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTT
CTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAG
GTTTATGTTCCTGGAATAAAAGTTGACACAGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTC
AACCGGAGACTGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG
Protein sequenceShow/hide protein sequence
MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSE
VYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA