CuGenDBv2

Gene ID	CmoCh18G012610
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Genome location	Cmo_Chr18:12330394..12332232
RNA-Seq Expression	CmoCh18G012610
Synteny	CmoCh18G012610
Gene Ontology terms	GO:0009409 - response to cold (biological process) GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domains	IPR044678 - Cold-regulated protein 27/28

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7013222.1 hypothetical protein SDJN02_25980 [Cucurbita argyrosperma subsp. argyrosperma]

3.1e-49

100

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

XP_022945615.1 uncharacterized protein LOC111449801 [Cucurbita moschata]

9.8e-64

100

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPINC
        VPQMENRAAEEEDEEDHPTSPINC
Subjt:  VPQMENRAAEEEDEEDHPTSPINC

XP_022968364.1 uncharacterized protein LOC111467625 [Cucurbita maxima]

3.1e-62

98.39

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGR+DGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPINC
        VPQMENRAAEEEDEEDH TSPINC
Subjt:  VPQMENRAAEEEDEEDHPTSPINC

XP_022984701.1 uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima]

5.2e-41

75.61

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPIN
        VPQME RA E+EDE DHP SP+N
Subjt:  VPQMENRAAEEEDEEDHPTSPIN

XP_023542542.1 uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo]

1.4e-62

100

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPIN
        VPQMENRAAEEEDEEDHPTSPIN
Subjt:  VPQMENRAAEEEDEEDHPTSPIN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5V0 Uncharacterized protein

3.6e-40

71.54

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        M SHVQF++TGP WT+EKH+HFLNS+EASFVRSM++N  HRR LRL+RLLPDTADSTLDS   + KN HPT+G  R++GRS+RRSRRISS P  S QDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPIN
        VPQME RA E+EDE DHP SP+N
Subjt:  VPQMENRAAEEEDEEDHPTSPIN

A0A6J1G1G2 uncharacterized protein LOC111449801

4.7e-64

100

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPINC
        VPQMENRAAEEEDEEDHPTSPINC
Subjt:  VPQMENRAAEEEDEEDHPTSPINC

A0A6J1HZF8 uncharacterized protein LOC111467625

1.5e-62

98.39

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGR+DGRSSRRSRRISSLPPISIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPINC
        VPQMENRAAEEEDEEDH TSPINC
Subjt:  VPQMENRAAEEEDEEDHPTSPINC

A0A6J1J606 uncharacterized protein LOC111482903 isoform X2

2.5e-41

75.61

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPIN
        VPQME RA E+EDE DHP SP+N
Subjt:  VPQMENRAAEEEDEEDHPTSPIN

A0A6J1JBA6 uncharacterized protein LOC111482903 isoform X1

4.3e-41

75.61

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Query:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
        M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQV
Subjt:  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV

Query:  VPQMENRAAEEEDEEDHPTSPIN
        VPQME RA E+EDE DHP SP+N
Subjt:  VPQMENRAAEEEDEEDHPTSPIN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAA
TCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGAG
GTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCCCATTTCAATTCAAGATCAGGTGGTCCCACAAATGGAAAATAGAGCAGCTGAG
GAAGAAGATGAGGAAGACCATCCAACGTCACCTATCAATTGCTAA

mRNA sequence

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TGTACTCGCGTTTGGGTCAAGCCAACGCAAAGGAGATGCCAACCTATTGGCTCTCTTCGTAGATCGCTCTATAAAAGCCATCGTAATTAACTCCAAACCCACCGGAAAAC
TCCATTTTTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCTCTGTGTTTTCTTTCCTCATAAACCCTAGCCATGGCGTCGCACGTGCAATTCAGCAAAACGGG
GCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACC
GCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGAGGTGGCAGAATGGACGGTAGATCTAGCAGGAGA
TCGAGGAGGATATCATCTCTACCGCCCATTTCAATTCAAGATCAGGTGGTCCCACAAATGGAAAATAGAGCAGCTGAGGAAGAAGATGAGGAAGACCATCCAACGTCACC
TATCAATTGCTAAATTGCATTTTTCCACTATTTTTTTTTATGTCTTTTCGCTTTATTGGGTTCAATCTAAATTAATTAACAATGGTGTGAAAAAAAAAAAGGGTTTAATT
AATATAATTGGGGGAAGGATTAATTGATTATGTCTCGCTCGAATGATTTTAAACATGCGAATGCAAGCTACCTGACTTTTACTTTTTAATCA

Protein sequence

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MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAE
EEDEEDHPTSPINC

CmoCh18G012610 (gene) of Cucurbita moschata (Rifu) v1 genome