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CmoCh18G013040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G013040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed primase/polymerase protein
Genome locationCmo_Chr18:12497733..12500953
RNA-Seq ExpressionCmoCh18G013040
SyntenyCmoCh18G013040
Gene Ontology termsGO:0006264 - mitochondrial DNA replication (biological process)
GO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0009411 - response to UV (biological process)
GO:0031297 - replication fork processing (biological process)
GO:0042276 - error-prone translesion synthesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005759 - mitochondrial matrix (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003896 - DNA primase activity (molecular function)
InterPro domainsIPR044917 - DNA-directed primase/polymerase protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574204.1 hypothetical protein SDJN03_28091, partial [Cucurbita argyrosperma subsp. sororia]2.4e-5569.83Show/hide
Query:  MLHVRRFSSLIFRQCNERPRFHGKSTKAWIQNLATIKLIQEVAPRHVYFDMEYKIKISAGKIGDLDSSNKCEEDMFMASLVCNVDAECEKLLVCETELHC
        ML VRRFSSLIFR+  +  +   K   +          ++E               I        D   KCEEDMFMASLVCNVDAECEKLLVC TELHC
Subjt:  MLHVRRFSSLIFRQCNERPRFHGKSTKAWIQNLATIKLIQEVAPRHVYFDMEYKIKISAGKIGDLDSSNKCEEDMFMASLVCNVDAECEKLLVCETELHC

Query:  VKTLQFEMEEICNFGRFVESAASTGNVSVMYVVDLTMAAYYQSVTIQIVEVTDLHCVQVQLMPFLILGSPRIQNRYQMT
        VKTLQFEMEEICNFGRFVESAASTGNVSVMYVVDLTMAAYYQSVTIQIVEVTDLHCVQVQLMPFLILGSPRIQNRYQMT
Subjt:  VKTLQFEMEEICNFGRFVESAASTGNVSVMYVVDLTMAAYYQSVTIQIVEVTDLHCVQVQLMPFLILGSPRIQNRYQMT

KAG7014744.1 DNA-directed primase/polymerase protein [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1474.14Show/hide
Query:  CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAASTG
        CEEDMFMASL+CNVDA+C+KLLVC+T+L CVKTLQFEMEE CNFGR   F + A  TG
Subjt:  CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAASTG

TYK23011.1 DNA-directed primase/polymerase protein isoform X2 [Cucumis melo var. makuwa]2.2e-1653.47Show/hide
Query:  MFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTMAAYY
        MFMASL+CNVDAECEKLLVC+ +L C+KTLQFE EE CNFGR                                 FV+S ASTG+V+VMYVVDL  AAYY
Subjt:  MFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTMAAYY

Query:  Q
        Q
Subjt:  Q

XP_016899008.1 PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Cucumis melo]1.6e-1944.59Show/hide
Query:  APRHVYFD---------MEYKIKISAGKIGDLDSSNK------CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR-----------
        +P H++ D             +   AGK   L  S +      CEEDMFMASL+CNVDAECEKLLVC+ +L C+KTLQFE EE CNFGR           
Subjt:  APRHVYFD---------MEYKIKISAGKIGDLDSSNK------CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR-----------

Query:  ----------------------FVESAASTGNVSVMYVVDLTMAAYYQ
                              FV+S ASTG+V+VMYVVDL  AAYYQ
Subjt:  ----------------------FVESAASTGNVSVMYVVDLTMAAYYQ

XP_023552310.1 DNA-directed primase/polymerase protein [Cucurbita pepo subsp. pepo]5.4e-1575.86Show/hide
Query:  CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAASTG
        CEEDMFMASL+CNVDA+CEKLLVC+T+L CVKTLQFEMEE CNFGR   F + A  TG
Subjt:  CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAASTG

TrEMBL top hitse value%identityAlignment
A0A1S3AYI4 DNA-directed primase/polymerase protein isoform X17.7e-1548.54Show/hide
Query:  APRHVYFD---------MEYKIKISAGKIGDLDSSNK------CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAAST
        +P H++ D             +   AGK   L  S +      CEEDMFMASL+CNVDAECEKLLVC+ +L C+KTLQFE EE CNFGR   F + A  T
Subjt:  APRHVYFD---------MEYKIKISAGKIGDLDSSNK------CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAAST

Query:  GNV
        G++
Subjt:  GNV

A0A1S4DSQ0 DNA-directed primase/polymerase protein isoform X37.7e-1548.54Show/hide
Query:  APRHVYFD---------MEYKIKISAGKIGDLDSSNK------CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAAST
        +P H++ D             +   AGK   L  S +      CEEDMFMASL+CNVDAECEKLLVC+ +L C+KTLQFE EE CNFGR   F + A  T
Subjt:  APRHVYFD---------MEYKIKISAGKIGDLDSSNK------CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAAST

Query:  GNV
        G++
Subjt:  GNV

A0A1S4DSS4 DNA-directed primase/polymerase protein isoform X27.9e-2044.59Show/hide
Query:  APRHVYFD---------MEYKIKISAGKIGDLDSSNK------CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR-----------
        +P H++ D             +   AGK   L  S +      CEEDMFMASL+CNVDAECEKLLVC+ +L C+KTLQFE EE CNFGR           
Subjt:  APRHVYFD---------MEYKIKISAGKIGDLDSSNK------CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR-----------

Query:  ----------------------FVESAASTGNVSVMYVVDLTMAAYYQ
                              FV+S ASTG+V+VMYVVDL  AAYYQ
Subjt:  ----------------------FVESAASTGNVSVMYVVDLTMAAYYQ

A0A5D3DH78 DNA-directed primase/polymerase protein isoform X21.1e-1653.47Show/hide
Query:  MFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTMAAYY
        MFMASL+CNVDAECEKLLVC+ +L C+KTLQFE EE CNFGR                                 FV+S ASTG+V+VMYVVDL  AAYY
Subjt:  MFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---------------------------------FVESAASTGNVSVMYVVDLTMAAYY

Query:  Q
        Q
Subjt:  Q

A0A6J1E4L8 DNA-directed primase/polymerase protein5.9e-1574.14Show/hide
Query:  CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAASTG
        CEEDMFMASL+CNVDA+C+KLLVC+T+L CVKTLQFEMEE CNFGR   F + A  TG
Subjt:  CEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEEICNFGR---FVESAASTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52800.1 DNA primases9.0e-0860.53Show/hide
Query:  EEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEME
        E D+FM SL+CNV+++CEKLLVC+ E  C+KTL F+ E
Subjt:  EEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEME

AT5G52800.2 DNA primases9.0e-0860.53Show/hide
Query:  EEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEME
        E D+FM SL+CNV+++CEKLLVC+ E  C+KTL F+ E
Subjt:  EEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEME

AT5G52800.3 DNA primases9.0e-0860.53Show/hide
Query:  EEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEME
        E D+FM SL+CNV+++CEKLLVC+ E  C+KTL F+ E
Subjt:  EEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCATGTGCGGCGTTTCTCATCCTTAATCTTCCGACAATGCAACGAACGGCCAAGATTTCATGGAAAAAGTACAAAAGCATGGATTCAAAATTTAGCCACCATTAA
ATTGATTCAAGAGGTTGCTCCGCGTCATGTTTACTTTGATATGGAGTACAAGATAAAAATCAGCGCGGGAAAAATTGGAGACCTTGATTCCTCAAACAAGTGTGAGGAAG
ACATGTTCATGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGGTTTGCGAAACGGAATTACACTGCGTAAAGACATTGCAATTTGAAATGGAGGAG
ATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATGTATGTTGTCGACCTTACGATGGCTGCCTATTACCAAAGTGTCACGATCCA
GATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTTGGGTCTCCACGGATTCAGAACAGATATCAAATGACATAG
mRNA sequenceShow/hide mRNA sequence
GTGAAGGACGACGTCGATCGGTCGTTTGAATGCTTCATGTGCGGCGTTTCTCATCCTTAATCTTCCGACAATGCAACGAACGGCCAAGATTTCATGGAAAAAGTACAAAA
GCATGGATTCAAAATTTAGCCACCATTAAATTGATTCAAGAGGTTGCTCCGCGTCATGTTTACTTTGATATGGAGTACAAGATAAAAATCAGCGCGGGAAAAATTGGAGA
CCTTGATTCCTCAAACAAGTGTGAGGAAGACATGTTCATGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGGTTTGCGAAACGGAATTACACTGCG
TAAAGACATTGCAATTTGAAATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATGTATGTTGTCGACCTTACGATG
GCTGCCTATTACCAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTTGGGTCTCCACGGATTCAGAA
CAGATATCAAATGACATAGAATCGTCCAACTGATGCCATCTTCGTGCATGCGTTTCCAACTCGCGAGCAGCTAGGTTTCGGATCCAGGGTAAGCAAAAATCCCTGAACAC
CTAATTATTTTCTGAACTCTTTGATATTGTCCATAGTTAATTGAGCTTAAGAGTCAAATTGTTCTGCTCCCCTTTCAAAGCTCCGCACCATTAGAGAGTCAGTTTTATTA
ACGCAAATAGGATAAATTTCTATCTCGATCGCC
Protein sequenceShow/hide protein sequence
MLHVRRFSSLIFRQCNERPRFHGKSTKAWIQNLATIKLIQEVAPRHVYFDMEYKIKISAGKIGDLDSSNKCEEDMFMASLVCNVDAECEKLLVCETELHCVKTLQFEMEE
ICNFGRFVESAASTGNVSVMYVVDLTMAAYYQSVTIQIVEVTDLHCVQVQLMPFLILGSPRIQNRYQMT