CuGenDBv2

Gene ID	CmoCh18G013300
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RNA polymerase sigma factor
Genome location	Cmo_Chr18:12641956..12645142
RNA-Seq Expression	CmoCh18G013300
Synteny	CmoCh18G013300
Gene Ontology terms	GO:0071482 - cellular response to light stimulus (biological process) GO:2000142 - regulation of DNA-templated transcription, initiation (biological process) GO:0003677 - DNA binding (molecular function) GO:0016987 - sigma factor activity (molecular function)
InterPro domains	IPR000943 - RNA polymerase sigma-70 IPR007624 - RNA polymerase sigma-70 region 3 IPR007627 - RNA polymerase sigma-70 region 2 IPR007630 - RNA polymerase sigma-70 region 4 IPR013324 - RNA polymerase sigma factor, region 3/4-like IPR013325 - RNA polymerase sigma factor, region 2 IPR014284 - RNA polymerase sigma-70 like domain IPR036388 - Winged helix-like DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6574228.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-276

97.87

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Query:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
        MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN+RNQKRSGKTSKSLKRVKAVFI EATPCTLDVDYYEAAAKL
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL

Query:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL
        ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL
Subjt:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL

Query:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
        DWKKMKIPPVLSSSEHTRLFKLVQPMK        ELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
Subjt:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED

Query:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
        FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
Subjt:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL

Query:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
        EVMRAIKPVYSLHSRHSTTSEEFINAITDVE TGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
Subjt:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM

Query:  KLKHPARVDYLRRHLI
        KLKHPARVDYLRRHLI
Subjt:  KLKHPARVDYLRRHLI

XP_022945188.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita moschata]

7.2e-278

98.45

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
        MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL

Query:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL
        ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL
Subjt:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL

Query:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
        DWKKMKIPPVLSSSEHTRLFKLVQPMK        ELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
Subjt:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED

Query:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
        FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
Subjt:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL

Query:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
        EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
Subjt:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM

Query:  KLKHPARVDYLRRHLI
        KLKHPARVDYLRRHLI
Subjt:  KLKHPARVDYLRRHLI

XP_022968276.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita maxima]

1.1e-273

96.71

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
        MGVVTVSSSAARSPLRLGAIFSNHN SKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN+RNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL

Query:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL
        ENIFKLSSVTEDTD+ECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKA PSLRKQKDTVSEADETDDLVRNYP STDM SL
Subjt:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL

Query:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
        DWKKMKIPPVLSSSEHTRLFKLVQPMK        ELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
Subjt:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED

Query:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
        FASGPKFQDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
Subjt:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL

Query:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
        EVMRAIKPVYSLHSRHSTTSEEFINAITDVE TGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
Subjt:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM

Query:  KLKHPARVDYLRRHLI
        KLKHPARVDYLRRHLI
Subjt:  KLKHPARVDYLRRHLI

XP_023543020.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]

7.7e-272

96.52

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNHN-LSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK
        MGVVTVSSSAARSPLRLGAIFSNHN  SKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN+RNQKRSGKTSKSLKRVKAVFIDEATPCT DVDYYEAAAK
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHN-LSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK

Query:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS
        LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRP DGIVRNHTRRIKRLDLDKRIALKSNKE KATPSLRKQKDTVSEADETDDLVRNYPASTDM S
Subjt:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS

Query:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE
        LDWKKMKIPPVLSSSEHTRLFKLVQPMK        ELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE
Subjt:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE

Query:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY
        DFA+GPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY
Subjt:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY

Query:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
        LEVMRAIKPVYSLHSRHSTTSEEFINAITDVE TGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
Subjt:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL

Query:  MKLKHPARVDYLRRHLI
        MKLKHPARVDYLRRHLI
Subjt:  MKLKHPARVDYLRRHLI

XP_038903010.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida]

2.3e-244

87.81

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK
        MGVVTVSSSAARSP RLGA F+NHN + KRPSIVAFK DKHT+TTLVSPHEQV LPVESN+ N+KRSGKTSK LKRVKAV IDEATPCTLDVDY EAAAK
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK

Query:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS
        LENIFKLS VTEDTD+E +DGR KR QQRRKK DKR SDGIVRN T+RIKRLDLDKRIAL+SNKEGKA PSLRKQKDT +E DE D LVR+Y ASTD+ S
Subjt:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS

Query:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE
        LDWKKMKIPPVL SSEHTRLFKLVQPMK         LIQVQEELQKELGREPTEGEL + TNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFE
Subjt:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE

Query:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY
        DFASGPKFQDLCQAGVKGL+TAIDRFEPKR+FRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRV+IQ+AKLELSCE HRLPTEEEIIAKVGISPERY
Subjt:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY

Query:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
        LEVMRA KPVYSLHS+HSTTSEEFIN ITDVE TGGDN+RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
Subjt:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL

Query:  MKLKHPARVDYLRRHLI
        MKLKHPARVDYLRR+L+
Subjt:  MKLKHPARVDYLRRHLI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E518 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2

2.8e-243

87.62

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNH-NLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK
        MGVVTVSSSAAR+P RLG  FSN+ +  KRPSIVAFKVDKHT+TTLVSPHEQV LPVESN+RNQKR+GK+SKSLKRVKAV IDEATPCT DVDY EAAAK
Subjt:  MGVVTVSSSAARSPLRLGAIFSNH-NLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK

Query:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS
        LENIFKLS VTEDTD+E EDGRPKR QQRRKK  KRP DG+VRN T+RIKRLDLDKRIALKSNKEGK+ PSL KQKDT SEADE DDLVRNY ASTD+ S
Subjt:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS

Query:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE
        LDWKKMKIPPVL SSEHTRLFKLVQPMK         LIQ QEELQK LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFE
Subjt:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE

Query:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY
        DFASGPKFQDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRV+IQRAKLEL CE HRLPTEEE+IAKVGISPERY
Subjt:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY

Query:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
        LEVMRA KPVYSLHSRHSTTSEEFI+ I DVE TGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
Subjt:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL

Query:  MKLKHPARVDYLRRHLI
        MKLKHPARVDYLRR+LI
Subjt:  MKLKHPARVDYLRRHLI

A0A6J1E9R5 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1

2.8e-243

87.62

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNH-NLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK
        MGVVTVSSSAAR+P RLG  FSN+ +  KRPSIVAFKVDKHT+TTLVSPHEQV LPVESN+RNQKR+GK+SKSLKRVKAV IDEATPCT DVDY EAAAK
Subjt:  MGVVTVSSSAARSPLRLGAIFSNH-NLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK

Query:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS
        LENIFKLS VTEDTD+E EDGRPKR QQRRKK  KRP DG+VRN T+RIKRLDLDKRIALKSNKEGK+ PSL KQKDT SEADE DDLVRNY ASTD+ S
Subjt:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS

Query:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE
        LDWKKMKIPPVL SSEHTRLFKLVQPMK         LIQ QEELQK LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFE
Subjt:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE

Query:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY
        DFASGPKFQDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRV+IQRAKLEL CE HRLPTEEE+IAKVGISPERY
Subjt:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY

Query:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
        LEVMRA KPVYSLHSRHSTTSEEFI+ I DVE TGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
Subjt:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL

Query:  MKLKHPARVDYLRRHLI
        MKLKHPARVDYLRR+LI
Subjt:  MKLKHPARVDYLRRHLI

A0A6J1G085 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like

3.5e-278

98.45

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
        MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL

Query:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL
        ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL
Subjt:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL

Query:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
        DWKKMKIPPVLSSSEHTRLFKLVQPMK        ELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
Subjt:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED

Query:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
        FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
Subjt:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL

Query:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
        EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
Subjt:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM

Query:  KLKHPARVDYLRRHLI
        KLKHPARVDYLRRHLI
Subjt:  KLKHPARVDYLRRHLI

A0A6J1HXK0 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like

5.2e-274

96.71

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
        MGVVTVSSSAARSPLRLGAIFSNHN SKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN+RNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKL

Query:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL
        ENIFKLSSVTEDTD+ECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKA PSLRKQKDTVSEADETDDLVRNYP STDM SL
Subjt:  ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASL

Query:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
        DWKKMKIPPVLSSSEHTRLFKLVQPMK        ELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED
Subjt:  DWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFED

Query:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
        FASGPKFQDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL
Subjt:  FASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYL

Query:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
        EVMRAIKPVYSLHSRHSTTSEEFINAITDVE TGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
Subjt:  EVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM

Query:  KLKHPARVDYLRRHLI
        KLKHPARVDYLRRHLI
Subjt:  KLKHPARVDYLRRHLI

A0A6J1J8N6 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2

1.8e-242

87.43

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNH-NLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK
        MGVVTVSSSAAR+P RLG  FSN+ + SKRPSIVAFKVDKHT+ TLVSPHEQV LPVESN+RNQKR+GKTSKSLKRVKAV IDEATPCT DVDY EAAAK
Subjt:  MGVVTVSSSAARSPLRLGAIFSNH-NLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAK

Query:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS
        LENIFKLS VTEDTD+E EDGRPKR QQRRKK  KRP DG+VRN T+RIKRLDLD+RIALKSNKEGK+ PSL  QKDT SEADE DDLVRNY ASTD+ S
Subjt:  LENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMAS

Query:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE
        LDWKKMKIPPVL SSEHTRLFKLVQPMK         LIQ QEELQK LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFE
Subjt:  LDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE

Query:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY
        DFASGPKFQDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRV+IQRAKLEL CE HRLPTEEE+IAKVGISPERY
Subjt:  DFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERY

Query:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
        LEVMRA KPVYSLHSRHSTTSEEFI+ I DVE TGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL
Subjt:  LEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKAL

Query:  MKLKHPARVDYLRRHLI
        MKLKHPARVDYLRR+LI
Subjt:  MKLKHPARVDYLRRHLI

SwissProt top hits

e value

%identity

Alignment

P26683 RNA polymerase sigma factor SigA

1.5e-36

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Query:  RLFKLVQPMKVRLRNSD-VELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVK
        RL +  + +++  + +D +EL +V+E L ++L R+P + E  +A  + +   R +L +GR A++ +++ NLRLV+ +  KY      G  FQDL Q G  
Subjt:  RLFKLVQPMKVRLRNSD-VELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVK

Query:  GLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSR
        GL+ A ++F+ ++ ++ STYA +WIR AI R+I   S T R+   L      I++    LS E  R PTEEEI  ++ ++ E+   + ++ +   SL + 
Subjt:  GLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSR

Query:  HSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL
             +  +    + +    ++Q    LLR  L+ VLDSL P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ ++
Subjt:  HSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL

P38023 RNA polymerase sigma factor SigA1

4.6e-33

30.08

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Query:  KSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVE------------LIQVQEELQKE
        K +   KAT ++ +   T++   + D +        D  +    K K+     + +  RL+ L +  ++RL  +D E            L ++++EL ++
Subjt:  KSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVE------------LIQVQEELQKE

Query:  LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIR
        L R P++ E   A +  + + RR+L  GR A++ +++ NLRLV+ +  KY      G  FQDL Q G  GL+ A ++F+ ++ ++ STYA +WIR AI R
Subjt:  LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIR

Query:  SITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRL
        +I   S T R+   L      I++    LS E  R PTEEEI  ++ ++ E+   + ++ +   SL +      +  +    + +    +++    LLR 
Subjt:  SITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRL

Query:  ALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL
         L+ VL +L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ ++
Subjt:  ALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL

P52322 RNA polymerase sigma factor SigA

8.6e-32

32.21

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Query:  LFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGL
        LF+ ++ + V     + +L  ++  L K     P   E +  +   +   +R+L  GR A+  +++ NLRLV+ +  KY      G  FQDL Q G  GL
Subjt:  LFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGL

Query:  MTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHS
        + A ++F+ ++ ++ STYA +WIR AI R+I   S T R+   L      I++    LS E  R PTEEEI  K+ ++ E+   + ++ +   SL +   
Subjt:  MTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHS

Query:  TTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL
           +  +    + +    +++    LLR  L++VLD+L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ ++
Subjt:  TTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL

P74565 RNA polymerase sigma factor SigA

5.6e-31

29.16

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Query:  DLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVE---------LIQVQE
        DL++ +A    KE K     + +KD V +   T+D +R Y        L   + +I      ++   L  +   + ++L     E         L   ++
Subjt:  DLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVE---------LIQVQE

Query:  ELQKELGREP-----------------TEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRF
         L  +  +EP                  E E     N N    RR+L + R A++ +++ NLRLV+ +  KY      G  FQDL Q G  GL+ A ++F
Subjt:  ELQKELGREP-----------------TEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRF

Query:  EPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFI
        + ++ ++ STYA +WIR AI R+I   S T R+   L      I++    LS E  R PTEEEI  K+ ++ E+   + ++ +   SL +      +  +
Subjt:  EPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFI

Query:  NAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL
            + +    +++    LLR  L++VLD+L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ ++
Subjt:  NAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL

Q9ZNX9 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial

3.7e-160

59.62

Show/hide

Query:  MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTL-VSPHEQVILPVESNSRNQKR--SGKTSKSLKRVKAVFIDEATPCTLDVDYYEA
        MGVV++SSSAARSPL LG     H  S K+PSIVAFK D  +++ L + P EQV++P E ++  ++     K  K+ K+  ++  + A  C+L VDY EA
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTL-VSPHEQVILPVESNSRNQKR--SGKTSKSLKRVKAVFIDEATPCTLDVDYYEA

Query:  AAKLENIFKLSSVTE---DTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDT--VSEADETDDLVRNY
        AA+LE+I+KLS  T    + DVE    + K  ++R++K        +VRN+ ++ KR+ LDKRIALK N + K   +   +K T    E ++ + LVR+Y
Subjt:  AAKLENIFKLSSVTE---DTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDT--VSEADETDDLVRNY

Query:  PASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVL
         AS D+ SLDWKKMKIPPVLSS+EH  LFKL+QPMK         L++V++ LQK LGREP E E+    NM   +V++++E+GRAARN LIKHNLRLVL
Subjt:  PASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVL

Query:  FVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAK
        FV+NKYF +F +GPKFQDLCQAG++GL+TAIDRFEPKR+FRLSTY LFWIRHAIIRS+T S+FTRV FGL+SVRV+I +AK EL  E  R PTE+E++ +
Subjt:  FVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAK

Query:  VGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMV
        + I+PERY EV+RA KPV SL+S+HS T EEFIN ITDV+  G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMV
Subjt:  VGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMV

Query:  RKHEVKALMKLKHPARVDYLRRHLI
        RKHEVKALMKLKH ARVDYLR++++
Subjt:  RKHEVKALMKLKHPARVDYLRRHLI

Arabidopsis top hits

e value

%identity

Alignment

AT1G08540.1 RNApolymerase sigma subunit 2

3.7e-30

27.57

Show/hide

Query:  RQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLR-----KQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRL
        +Q+  +  +++PS  +    TR+ +R     R A    K     PS++     K+K  V++  + +D +R    +T  + L          L+  E   L
Subjt:  RQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLR-----KQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRL

Query:  FKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLM
           +Q +        ++L ++Q EL +  GR+PT  +   A  ++   +R+++  G   ++ +IK N+RLV+ +   Y     +G   QDL Q G +GL+
Subjt:  FKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLM

Query:  TAIDRFEPKRRFRLSTYALFWIRHAIIRSIT-LSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHST
           ++F+  + F+ STYA +WI+ A+ +S++  S   R+ F +      ++ A+ +L  E  + P  EEI    G+S +R + V+ + KP  SL  +   
Subjt:  TAIDRFEPKRRFRLSTYALFWIRHAIIRSIT-LSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHST

Query:  TSE-EFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI
            +    I D E+   ++      +R  LD VLDSL  +E  VIR R+G++    +TL EI   + +SRE VR+ E  A  KLK+  R ++L+++L+
Subjt:  TSE-EFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI

AT1G64860.1 sigma factor A

2.9e-19

29.32

Show/hide

Query:  VLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQD
        VLS  E  RL K ++        S + L   +  L+  LG EP++ +L  +  ++  +++  L     AR  L   N+RLV+ +  +Y      G +  D
Subjt:  VLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQD

Query:  LCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKP
        L Q G+ GL+  I++F+  + FR+STY  +WIR  + R++  +S T R+   L      I+ AKL L  E    P+ + I   + +S ++      A+  
Subjt:  LCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKP

Query:  VY--------SLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM
        V+        SL+     T   +I A T +E+         AL       +  +L  +E  +IR  YGLD K   T  +I+  + +SRE VR+  + AL 
Subjt:  VY--------SLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALM

Query:  KLKHPAR
        KLKH AR
Subjt:  KLKHPAR

AT2G36990.1 RNApolymerase sigma-subunit F

1.5e-26

28.27

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Query:  PSDGIVRNHTRRIKRLDLDKRIALKSN--KEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNS
        P  G +    R+++R   ++R A KSN   +    P     K    +  + DD ++ +    +   L          L++ E   L   +Q +       
Subjt:  PSDGIVRNHTRRIKRLDLDKRIALKSN--KEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNS

Query:  DVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRL
         ++L +V+ +L+ + G EPT GE  +A  ++   ++  +  GR++R  LI  NLRLV+ +  +Y      G  FQDL Q G  GLM ++++F+P+   R 
Subjt:  DVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRL

Query:  STYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLH----SRHSTTSEEFINAIT
        +TYA +WIR +I +SI  +S T R+   +  +   +  A+     E +  P++EE+   VG+S E+  +++   +   S+     S   TT +E I   +
Subjt:  STYALFWIRHAIIRSITLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLH----SRHSTTSEEFINAIT

Query:  DVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK
         +E+      +Q  L+R  + ++L+ L PKE  +I+ R+G+DG   R+L EI     +S+E VR+ E +AL +LK
Subjt:  DVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLK

AT3G53920.1 RNApolymerase sigma-subunit C

7.7e-20

28.22

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Query:  WKKMKIPPVLSSSEHTRLFKLVQPMKVRLRN-----SDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINK
        W  + +P V    ++ +  + +   +  +       +D+E I+ Q  L++E G+  +      A  MN   + R L  G   R+ L+K    LVLF+   
Subjt:  WKKMKIPPVLSSSEHTRLFKLVQPMKVRLRN-----SDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINK

Query:  YFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTR-VSFGLDSVRV--DIQRAKLELSCEHH-RLPTEEEIIAKV
        Y      G   +DL QAG  G++   +RF+  R ++ STY  +WIR ++  S  +S   R V      +R    IQ+A+  L   H  +   +EEI    
Subjt:  YFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTR-VSFGLDSVRV--DIQRAKLELSCEHH-RLPTEEEIIAKV

Query:  GISPERYLEVMRAIKPVYSLHSRHS---TTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISRE
        G S ++     + +K V S+  +     TT        T +ES      RQ A  R  + D+L+ L+P+E  V+  RYGL     ++L EI   L +S+E
Subjt:  GISPERYLEVMRAIKPVYSLHSRHS---TTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISRE

Query:  MVRKHEVKALMKLKHPARVDYLRRHL
         +RK E +A+ KL+     + LR +L
Subjt:  MVRKHEVKALMKLKHPARVDYLRRHL

AT5G24120.1 sigma factor E

2.6e-161

59.62

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Query:  MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTL-VSPHEQVILPVESNSRNQKR--SGKTSKSLKRVKAVFIDEATPCTLDVDYYEA
        MGVV++SSSAARSPL LG     H  S K+PSIVAFK D  +++ L + P EQV++P E ++  ++     K  K+ K+  ++  + A  C+L VDY EA
Subjt:  MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTL-VSPHEQVILPVESNSRNQKR--SGKTSKSLKRVKAVFIDEATPCTLDVDYYEA

Query:  AAKLENIFKLSSVTE---DTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDT--VSEADETDDLVRNY
        AA+LE+I+KLS  T    + DVE    + K  ++R++K        +VRN+ ++ KR+ LDKRIALK N + K   +   +K T    E ++ + LVR+Y
Subjt:  AAKLENIFKLSSVTE---DTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDT--VSEADETDDLVRNY

Query:  PASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVL
         AS D+ SLDWKKMKIPPVLSS+EH  LFKL+QPMK         L++V++ LQK LGREP E E+    NM   +V++++E+GRAARN LIKHNLRLVL
Subjt:  PASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVL

Query:  FVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAK
        FV+NKYF +F +GPKFQDLCQAG++GL+TAIDRFEPKR+FRLSTY LFWIRHAIIRS+T S+FTRV FGL+SVRV+I +AK EL  E  R PTE+E++ +
Subjt:  FVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAK

Query:  VGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMV
        + I+PERY EV+RA KPV SL+S+HS T EEFIN ITDV+  G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMV
Subjt:  VGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMV

Query:  RKHEVKALMKLKHPARVDYLRRHLI
        RKHEVKALMKLKH ARVDYLR++++
Subjt:  RKHEVKALMKLKHPARVDYLRRHLI

Sequences

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CDS sequence

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ATGGGAGTTGTGACCGTTTCAAGCTCTGCAGCACGATCTCCTCTTCGGCTGGGTGCAATATTCTCCAATCACAATTTGTCGAAAAGACCATCGATTGTCGCTTTTAAAGT
GGATAAGCACACTGACACTACTCTGGTCTCACCTCACGAGCAAGTGATCCTGCCTGTGGAGAGTAATAGCAGAAACCAGAAAAGATCAGGAAAAACAAGCAAATCTTTGA
AGAGAGTTAAAGCTGTCTTTATTGATGAAGCTACTCCCTGCACTTTGGATGTGGATTACTATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCTCTGTGACA
GAGGATACCGATGTGGAATGTGAAGATGGCAGACCGAAAAGACGCCAGCAAAGGAGGAAAAAACCAGACAAGAGACCAAGTGATGGCATAGTCAGGAACCATACTAGGAG
GATTAAGCGACTAGATCTAGACAAGAGGATAGCATTGAAAAGTAACAAGGAGGGCAAAGCAACTCCTTCATTAAGGAAACAAAAAGATACCGTAAGTGAAGCTGATGAAA
CTGATGATCTTGTTAGAAACTACCCTGCGTCAACTGATATGGCAAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTAGTTCATCAGAGCATACCCGTTTGTTC
AAGTTGGTTCAACCAATGAAGGTGAGGCTTAGGAATTCTGATGTTGAACTTATTCAAGTACAAGAAGAGCTGCAGAAAGAGTTGGGAAGAGAACCAACTGAAGGAGAATT
GGTCGATGCAACAAATATGAATGTAATTCAAGTGAGGAGGCAACTGGAGGTTGGTCGTGCTGCCAGAAACAATCTCATCAAGCATAATCTCCGCCTTGTACTGTTTGTGA
TCAACAAATACTTTGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCAGGTGTCAAGGGACTCATGACAGCAATCGACCGCTTTGAGCCAAAGAGGAGA
TTCCGGCTATCAACTTATGCTTTATTTTGGATAAGACATGCTATTATTCGGTCGATAACTCTCTCAAGCTTCACACGTGTCTCATTTGGACTCGACTCGGTAAGAGTTGA
TATTCAAAGAGCTAAACTTGAGTTATCATGTGAGCATCATAGATTACCAACAGAGGAAGAGATTATTGCAAAAGTTGGCATCTCGCCTGAGAGGTACCTAGAAGTAATGA
GGGCTATAAAACCAGTTTACTCTCTCCATTCTAGGCACTCGACTACATCAGAAGAGTTTATCAATGCGATCACTGATGTAGAAAGTACTGGAGGTGACAACCAGCGGCAA
CCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTCGACGGGAAAGGAAACCGAACATT
AGGTGAGATAGCAGGAAATCTAAATATTTCAAGAGAGATGGTGCGGAAGCACGAAGTTAAAGCTCTGATGAAGCTCAAACATCCTGCAAGAGTGGATTACCTTCGTCGGC
ATTTAATCTGA

mRNA sequence

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Protein sequence

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MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVT
EDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLF
KLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRR
FRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQ
PALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI

CmoCh18G013300 (gene) of Cucurbita moschata (Rifu) v1 genome