; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh18G013700 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh18G013700
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUbiquitin
Genome locationCmo_Chr18:12828851..12830713
RNA-Seq ExpressionCmoCh18G013700
SyntenyCmoCh18G013700
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038587 - Ribosomal protein L40e superfamily
IPR029071 - Ubiquitin-like domain superfamily
IPR019956 - Ubiquitin domain
IPR000626 - Ubiquitin-like domain
IPR001975 - Ribosomal protein L40e
IPR011332 - Zinc-binding ribosomal protein
IPR019954 - Ubiquitin conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAG7874465.1 unnamed protein product [Brassica rapa]1.8e-6098.36Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQTI
        ARLHPRAVNCRKKKCGHSNQ +
Subjt:  ARLHPRAVNCRKKKCGHSNQTI

ESR43397.1 hypothetical protein CICLE_v10013083mg [Citrus clementina]1.8e-6098.36Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQTI
        ARLHPRAVNCRKKKCGHSNQ +
Subjt:  ARLHPRAVNCRKKKCGHSNQTI

PIA34853.1 hypothetical protein AQUCO_03700255v1 [Aquilegia coerulea]8.3e-6193.85Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQTIDFETGKLC
        ARLHPRAVNCRKKKCGHSNQ   F     C
Subjt:  ARLHPRAVNCRKKKCGHSNQTIDFETGKLC

RDX85824.1 Ubiquitin-60S ribosomal protein L40 [Mucuna pruriens]1.4e-6080.62Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDK ICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQT-IDFETGKLCKSL-CFYLFLGAFMLRTLWLTLIRSWNCC
        ARLHPRAVNCRKKKCGHSNQ  I F    +  +L   Y+ + AF+L  +   L+ S+  C
Subjt:  ARLHPRAVNCRKKKCGHSNQT-IDFETGKLCKSL-CFYLFLGAFMLRTLWLTLIRSWNCC

XP_013633058.1 PREDICTED: ubiquitin-like [Brassica oleracea var. oleracea]1.4e-6086.11Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQTIDFETGKLCKSLCFYLFLGAFML
        ARLHPRAVNCRKKKCGHSNQ            L +Y+F   ++L
Subjt:  ARLHPRAVNCRKKKCGHSNQTIDFETGKLCKSLCFYLFLGAFML

TrEMBL top hitse value%identityAlignment
A0A1U7X7W2 Ubiquitin2.0e-60100Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQ
        ARLHPRAVNCRKKKCGHSNQ
Subjt:  ARLHPRAVNCRKKKCGHSNQ

A0A2G5CUA0 Ubiquitin4.0e-6193.85Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQTIDFETGKLC
        ARLHPRAVNCRKKKCGHSNQ   F     C
Subjt:  ARLHPRAVNCRKKKCGHSNQTIDFETGKLC

A0A371G5J5 Ubiquitin6.8e-6180.62Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDK ICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQT-IDFETGKLCKSL-CFYLFLGAFMLRTLWLTLIRSWNCC
        ARLHPRAVNCRKKKCGHSNQ  I F    +  +L   Y+ + AF+L  +   L+ S+  C
Subjt:  ARLHPRAVNCRKKKCGHSNQT-IDFETGKLCKSL-CFYLFLGAFMLRTLWLTLIRSWNCC

A0A4D8YPT6 Ubiquitin3.1e-6196.8Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQTIDFE
        ARLHPRAVNCRKKKCGHSNQ  + E
Subjt:  ARLHPRAVNCRKKKCGHSNQTIDFE

V4SRQ5 Ubiquitin8.9e-6198.36Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQTI
        ARLHPRAVNCRKKKCGHSNQ +
Subjt:  ARLHPRAVNCRKKKCGHSNQTI

SwissProt top hitse value%identityAlignment
B9DHA6 Ubiquitin-60S ribosomal protein L40-12.0e-6299.17Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQ
        ARLHPRAVNCRKKKCGHSNQ
Subjt:  ARLHPRAVNCRKKKCGHSNQ

P0CH34 Ubiquitin-60S ribosomal protein L40-12.0e-6299.17Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQ
        ARLHPRAVNCRKKKCGHSNQ
Subjt:  ARLHPRAVNCRKKKCGHSNQ

P0CH35 Ubiquitin-60S ribosomal protein L40-22.0e-6299.17Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQ
        ARLHPRAVNCRKKKCGHSNQ
Subjt:  ARLHPRAVNCRKKKCGHSNQ

P49636 Ubiquitin-60S ribosomal protein L401.2e-6299.17Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQ
        ARLHPRAVNCR+KKCGHSNQ
Subjt:  ARLHPRAVNCRKKKCGHSNQ

Q42202 Ubiquitin-60S ribosomal protein L40-22.0e-6299.17Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQ
        ARLHPRAVNCRKKKCGHSNQ
Subjt:  ARLHPRAVNCRKKKCGHSNQ

Arabidopsis top hitse value%identityAlignment
AT1G65350.1 ubiquitin 131.5e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT2G36170.1 Ubiquitin supergroup;Ribosomal protein L40e1.5e-6399.17Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQ
        ARLHPRAVNCRKKKCGHSNQ
Subjt:  ARLHPRAVNCRKKKCGHSNQ

AT3G52590.1 ubiquitin extension protein 11.5e-6399.17Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQ
        ARLHPRAVNCRKKKCGHSNQ
Subjt:  ARLHPRAVNCRKKKCGHSNQ

AT4G02890.1 Ubiquitin family protein1.5e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT4G05320.2 polyubiquitin 101.5e-3698.7Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGACACCATCGACAATGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCC
TCCGGACCAGCAGAGGCTTATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGAACTCTCGCCGACTACAACATCCAGAAGGAGTCAACTCTGCACTTGGTGCTCAGGCTTC
GTGGTGGTATTATTGAGCCCTCTTTGATGGCTTTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGC
AGGAAAAAGAAGTGTGGACACAGCAACCAGACCATTGATTTCGAGACAGGAAAGCTATGCAAAAGTTTATGTTTTTATTTATTTTTGGGTGCATTTATGCTCAGAACTCT
TTGGTTAACACTCATTAGGAGTTGGAATTGTTGTAATTTTTGTTTCTGCGACATTCTCAGTTATGGTATGTTTTGTTATTGA
mRNA sequenceShow/hide mRNA sequence
CGGACCCCATTCTGCATCCTCAACGTGGCCTCTTGATGACTTTGATTTGGGCTTAGATTTGTGAAATACGTACCCAAACATAAGAGAATCAGACACAATTGGGATACGGT
AATCCTGCACCCAAACACCCATCCCTACAAAACCCTAATTCAAAACCATATAAAATGGGCTTGTAATCGCCGTTCCAACGAGGAGGTAAGTGTCGCAAAGGCAGAGTTGC
AAACCAGAGAGAGCCTTAACGACGACACGACAGGATGCAGATCTTCGTCAAAACCCTTACTGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGACACCATCGACAATG
TCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAGCAGAGGCTTATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGAACTCTCGCCGACTACAACATCCAG
AAGGAGTCAACTCTGCACTTGGTGCTCAGGCTTCGTGGTGGTATTATTGAGCCCTCTTTGATGGCTTTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTG
CTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGACCATTGATTTCGAGACAGGAAAGCTATGCAAAAGTTTATGTTTTT
ATTTATTTTTGGGTGCATTTATGCTCAGAACTCTTTGGTTAACACTCATTAGGAGTTGGAATTGTTGTAATTTTTGTTTCTGCGACATTCTCAGTTATGGTATGTTTTGT
TATTGA
Protein sequenceShow/hide protein sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNC
RKKKCGHSNQTIDFETGKLCKSLCFYLFLGAFMLRTLWLTLIRSWNCCNFCFCDILSYGMFCY