CuGenDBv2

Gene ID	CmoCh18G013860
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	GTP-binding protein At3g49725, chloroplastic
Genome location	Cmo_Chr18:12880375..12880899
RNA-Seq Expression	CmoCh18G013860
Synteny	CmoCh18G013860
Gene Ontology terms	GO:0005525 - GTP binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR016496 - GTPase HflX

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574274.1 GTP-binding protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-71

92.26

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Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
        MLRIISVSQPRIKFLARYITSLSSAPT YLLPSNSPSKLLPPSVRILFSPFSHSSKHRKE+SNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL

Query:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD  F  GT+++   HL
Subjt:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

KAG7013344.1 GTP-binding protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

7.2e-72

92.26

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Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
        MLRI+SVSQPRIKFLARYITSLSSAPT YLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL

Query:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD  F  GT+++   HL
Subjt:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

XP_022945023.1 GTP-binding protein At3g49725, chloroplastic [Cucurbita moschata]

1.1e-72

93.55

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Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
        MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL

Query:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD  F  GT+++   HL
Subjt:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

XP_022967982.1 GTP-binding protein At3g49725, chloroplastic [Cucurbita maxima]

2.8e-68

90.32

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Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
        MLRIISVSQPRIKFLARYITSLSSA T YLLPSNSPSKLLPPSVRILFS FSHSSKHRKENSNDVVSVC+RDPIAPPKLFVVQPRLRPDTILQAKLNEAL
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL

Query:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        CLANSLEQQRDGYFDIDFFDKEIP HVVVQNPSARGARAD  F  GT+++   HL
Subjt:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

XP_023541707.1 GTP-binding protein At3g49725, chloroplastic [Cucurbita pepo subsp. pepo]

5.2e-70

90.97

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Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
        MLRIISVSQPRIKFLARYITSLSSA   YLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDV SVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL

Query:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD  F  GT+++   HL
Subjt:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UNL3 GTP-binding protein

4.9e-50

69.23

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Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSP-SKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEA
        MLRIIS+SQPR+  LA Y+ ++ SA T  LLPSN P S+LL P + IL SPFSHSSKH+KE+ +D+VS+ NRD  APPKLFVVQPRLRP T LQAKLNEA
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSP-SKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEA

Query:  LCLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        LCLANSLE+QRDGYF IDFFDK++PPHV+VQNPS RGARAD  F  GT+++   HL
Subjt:  LCLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

A0A5D3C2J4 GTP-binding protein

4.9e-50

69.23

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Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSP-SKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEA
        MLRIIS+SQPR+  LA Y+ ++ SA T  LLPSN P S+LL P + IL SPFSHSSKH+KE+ +D+VS+ NRD  APPKLFVVQPRLRP T LQAKLNEA
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSP-SKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEA

Query:  LCLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        LCLANSLE+QRDGYF IDFFDK++PPHV+VQNPS RGARAD  F  GT+++   HL
Subjt:  LCLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

A0A6J1CM56 GTP-binding protein At3g49725, chloroplastic

5.1e-55

73.42

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Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
        ML+IIS+SQPRIK +ARY+ S     T  L PSNSPS LL PS+ ILFSPFS+SSK +KE++NDVVSV NRDP AP KLFVVQPRLRPDT L+AKLNEAL
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL

Query:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHLKPT
        CLANSLE+QRDGYFD DFFDKEIPPHVVVQNPSARGARAD  F  GT+++   HL  T
Subjt:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHLKPT

A0A6J1FZN1 GTP-binding protein At3g49725, chloroplastic

5.4e-73

93.55

Show/hide

Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
        MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL

Query:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD  F  GT+++   HL
Subjt:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

A0A6J1HS97 GTP-binding protein At3g49725, chloroplastic

1.4e-68

90.32

Show/hide

Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL
        MLRIISVSQPRIKFLARYITSLSSA T YLLPSNSPSKLLPPSVRILFS FSHSSKHRKENSNDVVSVC+RDPIAPPKLFVVQPRLRPDTILQAKLNEAL
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEAL

Query:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL
        CLANSLEQQRDGYFDIDFFDKEIP HVVVQNPSARGARAD  F  GT+++   HL
Subjt:  CLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARAD-IFQLGTLESSLTHL

SwissProt top hits

e value

%identity

Alignment

Q0WTB4 GTP-binding protein At3g49725, chloroplastic

2.6e-24

44.85

Show/hide

Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENS--------NDVVSVCNRDPIAPPKLFVVQPRLRPDTIL
        MLR +S+++ R++         S  P+ +L      SK  P S     SPFS S +H  + S         D V +  +DP + PKLF+VQPRL P   L
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENS--------NDVVSVCNRDPIAPPKLFVVQPRLRPDTIL

Query:  QAKLNEALCLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARADI---FQLGTLESSLTHL
        QAKLNEALCLANSLE+QR GYF+ DFFDKE+P HVVVQNP  R ++  +   F  GT+++   HL
Subjt:  QAKLNEALCLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARADI---FQLGTLESSLTHL

Arabidopsis top hits

e value

%identity

Alignment

AT3G49725.1 GTP-binding protein, HflX

1.9e-25

44.85

Show/hide

Query:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENS--------NDVVSVCNRDPIAPPKLFVVQPRLRPDTIL
        MLR +S+++ R++         S  P+ +L      SK  P S     SPFS S +H  + S         D V +  +DP + PKLF+VQPRL P   L
Subjt:  MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENS--------NDVVSVCNRDPIAPPKLFVVQPRLRPDTIL

Query:  QAKLNEALCLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARADI---FQLGTLESSLTHL
        QAKLNEALCLANSLE+QR GYF+ DFFDKE+P HVVVQNP  R ++  +   F  GT+++   HL
Subjt:  QAKLNEALCLANSLEQQRDGYFDIDFFDKEIPPHVVVQNPSARGARADI---FQLGTLESSLTHL

Sequences

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CDS sequence

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ATGTTGAGAATTATCTCTGTATCGCAACCTCGCATCAAGTTTCTCGCCCGTTACATAACCTCTCTATCTTCCGCCCCAACAATCTACCTATTACCATCTAATTCTCCTTC
CAAGCTGTTGCCACCTTCGGTTCGGATACTCTTTTCGCCATTCTCGCACTCATCCAAGCACAGGAAGGAAAATAGCAACGACGTTGTTTCCGTTTGCAACAGAGACCCAA
TAGCTCCACCCAAACTCTTCGTGGTTCAACCTCGTCTTCGTCCCGATACTATTCTGCAAGCAAAGCTAAACGAGGCTTTGTGTCTTGCAAATTCTCTAGAACAACAACGG
GATGGGTATTTCGATATTGATTTCTTTGACAAGGAAATACCCCCTCACGTTGTAGTTCAAAATCCTTCTGCCAGAGGAGCTCGCGCTGACATTTTTCAGTTGGGGACACT
TGAGAGCTCTCTCACTCACCTCAAACCGACC

mRNA sequence

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Protein sequence

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MLRIISVSQPRIKFLARYITSLSSAPTIYLLPSNSPSKLLPPSVRILFSPFSHSSKHRKENSNDVVSVCNRDPIAPPKLFVVQPRLRPDTILQAKLNEALCLANSLEQQR
DGYFDIDFFDKEIPPHVVVQNPSARGARADIFQLGTLESSLTHLKPT

CmoCh18G013860 (gene) of Cucurbita moschata (Rifu) v1 genome