; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh19G001060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G001060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Genome locationCmo_Chr19:612576..613498
RNA-Seq ExpressionCmoCh19G001060
SyntenyCmoCh19G001060
Gene Ontology termsGO:0009299 - mRNA transcription (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR006936 - ALOG domain
IPR040222 - ALOG family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571528.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia]3.1e-5286.89Show/hide
Query:  TDCLYLVSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA
        T C  L+ K  + +   +  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA
Subjt:  TDCLYLVSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKA

Query:  RGISYEKKRKRPQAPHGAPRSS
        RGISYEKKRKRPQAPHGAPRSS
Subjt:  RGISYEKKRKRPQAPHGAPRSS

KAG7011271.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-5166.85Show/hide
Query:  KSVAIGKLSVNISTIIALRSLSRDAAVLMFSNSSGTE--QRSNFKKKGTDCLYL--------VSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPP
        ++V +    V I    +  S++   AV   S SS  E  +R ++K  G    YL        +S+ S +       YLDQFGKTKVHTAICPFYGLLNPP
Subjt:  KSVAIGKLSVNISTIIALRSLSRDAAVLMFSNSSGTE--QRSNFKKKGTDCLYL--------VSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPP

Query:  APCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPRSS
        APCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPRSS
Subjt:  APCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPRSS

XP_008447415.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo]1.7e-4597.87Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQA
        YLDQFGKTKVHTAICPFYGL NPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRP A
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQA

XP_022963940.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata]6.9e-52100Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
        YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR

Query:  SS
        SS
Subjt:  SS

XP_023554679.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo]6.9e-52100Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
        YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR

Query:  SS
        SS
Subjt:  SS

TrEMBL top hitse value%identityAlignment
A0A0A0L7E1 ALOG domain-containing protein1.0e-4589.62Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRP--------
        YLDQFGKTKVHTAICPFYGL NPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRP        
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRP--------

Query:  QAPHGA
        Q  HGA
Subjt:  QAPHGA

A0A1S3BGU6 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like8.0e-4697.87Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQA
        YLDQFGKTKVHTAICPFYGL NPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRP A
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQA

A0A5D3DAV8 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like8.0e-4697.87Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQA
        YLDQFGKTKVHTAICPFYGL NPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRP A
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQA

A0A6J1HJE1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like3.4e-52100Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
        YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR

Query:  SS
        SS
Subjt:  SS

A0A6J1HV32 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like3.4e-52100Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
        YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR

Query:  SS
        SS
Subjt:  SS

SwissProt top hitse value%identityAlignment
A2XAV5 Protein G1-like61.5e-4178.57Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGA
        Y+DQFGKTKVHT +CPFYG  NPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREVR+ Q++ARGISYEKK+++  +  GA
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGA

A2YG32 Protein G1-like24.4e-4187.1Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKK-RKRP
        YLDQFGKTKVH A CPF+G  +PPAPCPCPLRQAWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLREVRD Q+KARGI+YEKK RKRP
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKK-RKRP

O82268 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 32.1e-4381.37Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
        YLDQFGKTKVHT IC FYG  NPPAPCPCPLRQAWGSLDAL+GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++   P  +  
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR

Query:  SS
        SS
Subjt:  SS

Q6K5X1 Protein G1-like61.5e-4178.57Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGA
        Y+DQFGKTKVHT +CPFYG  NPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREVR+ Q++ARGISYEKK+++  +  GA
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGA

Q9LW68 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 42.0e-4156.89Show/hide
Query:  SVNISTIIALRSLSRDAAVLMFSNSSGTEQRSNFKKK-----GTDCLYL--------VSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPPAPCPC
        + N+    A  + +  ++    S  SGT Q S ++ +      T   YL        +S+ S +       YLDQFGKTKVHT +CPF+G  NPPAPC C
Subjt:  SVNISTIIALRSLSRDAAVLMFSNSSGTEQRSNFKKK-----GTDCLYL--------VSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPPAPCPC

Query:  PLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPQAP
        PLRQAWGSLDAL+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRP  P
Subjt:  PLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPQAP

Arabidopsis top hitse value%identityAlignment
AT1G07090.1 Protein of unknown function (DUF640)2.1e-3876.34Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP
        YLDQFGKTKVH A CP++G   PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q+KARGI YE KKRKRP
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRP

AT2G31160.1 Protein of unknown function (DUF640)1.5e-4481.37Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR
        YLDQFGKTKVHT IC FYG  NPPAPCPCPLRQAWGSLDAL+GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++   P  +  
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPR

Query:  SS
        SS
Subjt:  SS

AT3G04510.1 Protein of unknown function (DUF640)1.3e-4060.87Show/hide
Query:  FSNSSGTEQRSNFKKK--GTDCLYL------VSKFSSSIDRSIDL--YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG
        FS+   + +  N K++   T C YL      +S  S S    +D   YLDQFGKTKVH   C F+GL NPPAPCPCPLRQAWGSLDAL+GRLRAA+EENG
Subjt:  FSNSSGTEQRSNFKKK--GTDCLYL------VSKFSSSIDRSIDL--YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENG

Query:  GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR
        G PE +PFG+R+VR++LREVRD Q+K+RG+SYEKKRKR
Subjt:  GKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR

AT3G23290.2 Protein of unknown function (DUF640)1.4e-4256.89Show/hide
Query:  SVNISTIIALRSLSRDAAVLMFSNSSGTEQRSNFKKK-----GTDCLYL--------VSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPPAPCPC
        + N+    A  + +  ++    S  SGT Q S ++ +      T   YL        +S+ S +       YLDQFGKTKVHT +CPF+G  NPPAPC C
Subjt:  SVNISTIIALRSLSRDAAVLMFSNSSGTEQRSNFKKK-----GTDCLYL--------VSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPPAPCPC

Query:  PLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPQAP
        PLRQAWGSLDAL+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRP  P
Subjt:  PLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPQAP

AT5G28490.1 Protein of unknown function (DUF640)5.3e-4284.62Show/hide
Query:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR
        YLDQFGKTKVH   C F+GL NPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+KARG+SYEKKRKR
Subjt:  YLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCTCCGCTCGCTCTCTCGAGATGCAGCGGTGCTCATGTTCTCGAATTCCTC
AGGTACCGAACAAAGAAGTAATTTTAAAAAAAAGGGCACCGATTGCCTTTATCTGGTGTCAAAATTTTCTAGTTCGATCGATCGATCGATCGACTTGTATTTGGATCAAT
TTGGAAAGACGAAAGTGCACACAGCTATTTGCCCTTTCTATGGACTTCTGAACCCTCCCGCGCCATGCCCGTGCCCTCTACGACAAGCGTGGGGTAGTCTCGACGCGTTG
GTTGGCCGCCTTCGAGCCGCTTTCGAAGAGAATGGTGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTCTATCTTCGTGAAGTTCGTGATTTGCAGTC
AAAAGCTAGAGGGATTAGCTATGAGAAGAAAAGAAAGCGCCCACAAGCACCTCATGGTGCACCAAGATCATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCTCCGCTCGCTCTCTCGAGATGCAGCGGTGCTCATGTTCTCGAATTCCTC
AGGTACCGAACAAAGAAGTAATTTTAAAAAAAAGGGCACCGATTGCCTTTATCTGGTGTCAAAATTTTCTAGTTCGATCGATCGATCGATCGACTTGTATTTGGATCAAT
TTGGAAAGACGAAAGTGCACACAGCTATTTGCCCTTTCTATGGACTTCTGAACCCTCCCGCGCCATGCCCGTGCCCTCTACGACAAGCGTGGGGTAGTCTCGACGCGTTG
GTTGGCCGCCTTCGAGCCGCTTTCGAAGAGAATGGTGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTCTATCTTCGTGAAGTTCGTGATTTGCAGTC
AAAAGCTAGAGGGATTAGCTATGAGAAGAAAAGAAAGCGCCCACAAGCACCTCATGGTGCACCAAGATCATCATAAAAGATGCAAACTTTCAAAGGGAAATAACGAACAC
AACAAATTCACCAATTGGGTATTGCTCTAAACCTAATTATAAATCATGGGTTTTGCTTAATTTTTCATTTTCTTTTTTTTTTCTTGAATAAATTAAGGGTTTTTACTCTC
TCTATTTCCTCTAGGGTTTGGTAAATTTCAAGCATTTTTTACCCTCTTTTCTTTGCTATGGTGAATAAATTTTTCTGAAAAAGCTTCTAAGAAGACTGTGAAAAGGTGTA
AATCTCTGCTTTTGATGCAAATACTATCAGTGTTACTATTTGTGCACTTATGCTCAACGTTTGTAAATCTTGTTCATGTTTGTATTTAAATTAATCATCATTTTGTTGTC
TTAATTTTAG
Protein sequenceShow/hide protein sequence
MRIKSVAIGKLSVNISTIIALRSLSRDAAVLMFSNSSGTEQRSNFKKKGTDCLYLVSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDAL
VGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPRSS