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CmoCh19G001100 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G001100
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNucleolar protein 10
Genome locationCmo_Chr19:646440..650595
RNA-Seq ExpressionCmoCh19G001100
SyntenyCmoCh19G001100
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0042254 - ribosome biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030515 - snoRNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606368.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia]4.6e-2356.03Show/hide
Query:  ECLATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLL
        ECLATMYL +YINDNGDKVYTTK                                               KESPLGLV QSAHPARFSPDDKYSRQRVLL
Subjt:  ECLATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLL

Query:  KKRFGLLPTQQPPPKY
        KKRFGLLPTQ PPPKY
Subjt:  KKRFGLLPTQQPPPKY

KAG6785784.1 hypothetical protein POTOM_007368 [Populus tomentosa]3.7e-2058.56Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYL +YINDNGDKVYTTKV        +++L+              IFSL G+  ++        KESPLGL  QSAHPARFSPDDKYSRQRVLLKKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LLPTQQ P KY
Subjt:  LLPTQQPPPKY

KAG7011275.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-2459.13Show/hide
Query:  VECLATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVL
        VECLATMYLMYYINDNGDKVYTTK                                               KESPLGLVAQSAHPARFSPDDKYSRQRVL
Subjt:  VECLATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVL

Query:  LKKRFGLLPTQQPPP
        LKKRFGLLPTQQPPP
Subjt:  LKKRFGLLPTQQPPP

QHN85708.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis hypogaea]5.1e-2259.46Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYL +YINDNGDKVYTTKV        M+S    I+   +    L I+ L               KE+PLGL  QSAHPARFSPDDKYSRQRVLLKKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LLPTQQPPPKY
Subjt:  LLPTQQPPPKY

XP_022963952.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata]6.7e-2257.66Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYLMYYINDNGDKVYTTK                                               KESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LLPTQQPPPKY
Subjt:  LLPTQQPPPKY

TrEMBL top hitse value%identityAlignment
A0A1S3BHD2 Nucleolar protein 103.0e-2054.05Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYL +YINDNGDKVYTTK                                               KESPLGL  QSAHPARFSPDDKYSRQRVLLKKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LLPTQQPPPKY
Subjt:  LLPTQQPPPKY

A0A443NZR2 Nucleolar protein 102.3e-2053.1Show/hide
Query:  ATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKR
        A MYL YYIN+NGDKVYTTK                                               KESPLG+  QSAHPARFSPDDKYSRQRVLLKKR
Subjt:  ATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKR

Query:  FGLLPTQQPPPKY
        FGLLPTQQPPPKY
Subjt:  FGLLPTQQPPPKY

A0A6J1HGJ4 Nucleolar protein 103.2e-2257.66Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYLMYYINDNGDKVYTTK                                               KESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LLPTQQPPPKY
Subjt:  LLPTQQPPPKY

A0A6J1HVE0 Nucleolar protein 103.2e-2257.66Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYLMYYINDNGDKVYTTK                                               KESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LLPTQQPPPKY
Subjt:  LLPTQQPPPKY

K7MYQ3 Nucleolar protein 103.0e-2053.57Show/hide
Query:  TMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRF
        TMYL +YINDNGDKVYTTK                                               K+SPLGL  QSAHPARFSPDDKYSRQRVLLKKRF
Subjt:  TMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRF

Query:  GLLPTQQPPPKY
        GLLPTQQPPPKY
Subjt:  GLLPTQQPPPKY

SwissProt top hitse value%identityAlignment
Q6DRH5 H/ACA ribonucleoprotein complex subunit 33.2e-1137.61Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        M+L +Y+N+NG++VYT K                                               K  P G    SAHPARFSPDDK+SR RV +KKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPP
        LL TQQP P
Subjt:  LLPTQQPPP

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein8.8e-1745.95Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYL  YIN+ G+KVYTTK                                               KESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LLPTQ  P +Y
Subjt:  LLPTQQPPPKY

Q9NPE3 H/ACA ribonucleoprotein complex subunit 31.2e-1036.7Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        M+L YY+N+ GD+VYT K                                               K  P+G    SAHPARFSPDDKYSR R+ +KKRF 
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPP
        +L TQQP P
Subjt:  LLPTQQPPP

Q9P7M5 H/ACA ribonucleoprotein complex subunit nop109.4e-1138.74Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        M+LMYY+ND G +VYT K                                               K SP G V +S+HPARFSPDDKYSRQR  LKKRF 
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        +L TQ P   Y
Subjt:  LLPTQQPPPKY

Q9V5P6 H/ACA ribonucleoprotein complex subunit 31.1e-1139.64Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYLMY IN+NGD+VYT K                                               K +  G    SAHPARFSP+DKYSRQR+ +KKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LL TQ+P P Y
Subjt:  LLPTQQPPPKY

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein6.2e-1845.95Show/hide
Query:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG
        MYL  YIN+ G+KVYTTK                                               KESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFG
Subjt:  MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFG

Query:  LLPTQQPPPKY
        LLPTQ  P +Y
Subjt:  LLPTQQPPPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein3.1e-1771.43Show/hide
Query:  NDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        N+ G   +  KESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  NDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGAGTGTTTAGCAACGATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGGTTTGTCTTTCTTATAAGCTGTGTTGTATGTAC
TCTCTGATTTTGAAGATAATGAAGTGTGAAGCTGTTGATGATCGTTTGAACATCTTTAGCCTCAAGGGCCTGTGTTGCAATGATTCTGGATTTTATCAGCACCAA
GTTAAAGAATCGCCTCTAGGTTTGGTCGCACAATCTGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTT
GGCTTGCTACCCACACAGCAGCCGCCTCCGAAGTACTGA
mRNA sequenceShow/hide mRNA sequence
GTTGAGTGTTTAGCAACGATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGGTTTGTCTTTCTTATAAGCTGTGTTGTATGTAC
TCTCTGATTTTGAAGATAATGAAGTGTGAAGCTGTTGATGATCGTTTGAACATCTTTAGCCTCAAGGGCCTGTGTTGCAATGATTCTGGATTTTATCAGCACCAA
GTTAAAGAATCGCCTCTAGGTTTGGTCGCACAATCTGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTT
GGCTTGCTACCCACACAGCAGCCGCCTCCGAAGTACTGA
Protein sequenceShow/hide protein sequence
VECLATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRF
GLLPTQQPPPKY