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CmoCh19G001560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G001560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionC2H2-type domain-containing protein
Genome locationCmo_Chr19:958235..958729
RNA-Seq ExpressionCmoCh19G001560
SyntenyCmoCh19G001560
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571570.1 hypothetical protein SDJN03_28298, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4885.96Show/hide
Query:  ISDYPPSESPSP-----SSSSSVFAATHHQTHHPGLYPHPMYI-ANAANLHCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKN
        +SDY PSESPSP     SSSSS+FAATHHQTHHPGLYPHP+YI A+A NLHCFPNNPPLFYEHMGYYGG+CS+NRYHHHHHQYGVEDEQKVLNWQRNI+N
Subjt:  ISDYPPSESPSP-----SSSSSVFAATHHQTHHPGLYPHPMYI-ANAANLHCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKN

Query:  DNKKIQKLDLSLHL
        DNKK QKLDLSLHL
Subjt:  DNKKIQKLDLSLHL

XP_008447640.1 PREDICTED: protein LATE FLOWERING-like [Cucumis melo]5.1e-4465Show/hide
Query:  IEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANLHCFPNNPPLFY
        +E+TPSR+FPCLFCSRKF SSQALGGHQNAHKKERTAARKAKRI DY  S  SP  + +S VFAA+  Q H  GL PHP+YIA + ANLHCFPNN  L Y
Subjt:  IEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANLHCFPNNPPLFY

Query:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKN-------DNKKIQKLDLSLHL
        E+M + GGVCSSNRYH        +DE+ +LNW+RNIKN       D +K QKLDLSLHL
Subjt:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKN-------DNKKIQKLDLSLHL

XP_022967643.1 protein LATE FLOWERING-like [Cucurbita maxima]4.4e-8092.17Show/hide
Query:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSP--SSSSSVFAATHHQTHHPGLYPHPMYIANAA
        MKHE NNLSNSPA+E+ PSRIFPCLFCSRKF SSQALGGHQNAHKKERTAARKAKRISDY  SESPSP  SSSSSVFAATHHQTHHPGLYPHPMYIANAA
Subjt:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSP--SSSSSVFAATHHQTHHPGLYPHPMYIANAA

Query:  NLHCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL
        NLHCFPNNPPLFYEHMGYYGGVCSSNRY HHHHQYGVEDEQ VLNWQRNIKND KK QKLDLSLHL
Subjt:  NLHCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL

XP_023511523.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]2.9e-7989.82Show/hide
Query:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSP---SSSSSVFAATHHQTHHPGLYPHPMYIANA
        MKH+HNNLSNSPAI++TP RIFPCLFCSRKFH+SQALGGHQNAHKKERTAARKAKRISDY PSESPSP   SSSSSVFAATHHQTHHPG YPHPMYIANA
Subjt:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSP---SSSSSVFAATHHQTHHPGLYPHPMYIANA

Query:  ANLHCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL
        ANLHCFPNNPPLFYEH+GYY GVCSSNRY   HHQYGVEDEQK LNWQRNIKNDNKK QKLDLSLHL
Subjt:  ANLHCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL

XP_031739318.1 protein LATE FLOWERING [Cucumis sativus]2.3e-4461.4Show/hide
Query:  HEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANL
        +++N +     +E+ PSR+FPCLFCSRKF SSQALGGHQNAHKKERTAARKAKRI DY  S  SP P+ +S VFAA+  Q HHPGL PHP+YIA + ANL
Subjt:  HEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANL

Query:  HCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIK-------NDNKKIQKLDLSLHL
        HCFPNN  L YE+M + GGVC SNRYH        +DE+ +LNW+RNIK       +D +K QKLDLSLHL
Subjt:  HCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIK-------NDNKKIQKLDLSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0LE19 C2H2-type domain-containing protein1.9e-4465Show/hide
Query:  IEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANLHCFPNNPPLFY
        +E+ PSR+FPCLFCSRKF SSQALGGHQNAHKKERTAARKAKRI DY  S  SP P+ +S VFAA+  Q HHPGL PHP+YIA + ANLHCFPNN  L Y
Subjt:  IEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANLHCFPNNPPLFY

Query:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIK-------NDNKKIQKLDLSLHL
        E+M + GGVC SNRYH        +DE+ +LNW+RNIK       +D +K QKLDLSLHL
Subjt:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIK-------NDNKKIQKLDLSLHL

A0A1S3BIU8 protein LATE FLOWERING-like2.5e-4465Show/hide
Query:  IEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANLHCFPNNPPLFY
        +E+TPSR+FPCLFCSRKF SSQALGGHQNAHKKERTAARKAKRI DY  S  SP  + +S VFAA+  Q H  GL PHP+YIA + ANLHCFPNN  L Y
Subjt:  IEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANLHCFPNNPPLFY

Query:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKN-------DNKKIQKLDLSLHL
        E+M + GGVCSSNRYH        +DE+ +LNW+RNIKN       D +K QKLDLSLHL
Subjt:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKN-------DNKKIQKLDLSLHL

A0A5A7VIQ7 Protein LATE FLOWERING-like2.5e-4465Show/hide
Query:  IEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANLHCFPNNPPLFY
        +E+TPSR+FPCLFCSRKF SSQALGGHQNAHKKERTAARKAKRI DY  S  SP  + +S VFAA+  Q H  GL PHP+YIA + ANLHCFPNN  L Y
Subjt:  IEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPS-ESPSPSSSSSVFAATHHQTHHPGLYPHPMYIA-NAANLHCFPNNPPLFY

Query:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKN-------DNKKIQKLDLSLHL
        E+M + GGVCSSNRYH        +DE+ +LNW+RNIKN       D +K QKLDLSLHL
Subjt:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKN-------DNKKIQKLDLSLHL

A0A6J1ETH7 protein LATE FLOWERING3.2e-4463.25Show/hide
Query:  SNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYI-ANAANLHCFPNNP
        S+S  +E+TPSRIFPCLFCSRKF +SQALGGHQNAHKKERTA RKAKR+SDY  S S S SS      A + Q HHP + PHP+YI A+ ANLHCFPNN 
Subjt:  SNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYI-ANAANLHCFPNNP

Query:  PLFYEHMG---------YYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL
         +FY+ +G         YYGGVCS NRY     Q G EDE  VLNWQR+IK D +K QKLDLSLHL
Subjt:  PLFYEHMG---------YYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL

A0A6J1HVN7 protein LATE FLOWERING-like2.1e-8092.17Show/hide
Query:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSP--SSSSSVFAATHHQTHHPGLYPHPMYIANAA
        MKHE NNLSNSPA+E+ PSRIFPCLFCSRKF SSQALGGHQNAHKKERTAARKAKRISDY  SESPSP  SSSSSVFAATHHQTHHPGLYPHPMYIANAA
Subjt:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSP--SSSSSVFAATHHQTHHPGLYPHPMYIANAA

Query:  NLHCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL
        NLHCFPNNPPLFYEHMGYYGGVCSSNRY HHHHQYGVEDEQ VLNWQRNIKND KK QKLDLSLHL
Subjt:  NLHCFPNNPPLFYEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 21.2e-0847.95Show/hide
Query:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAK---RISDYPPSESPSPSS
        M    ++ +NS +  + P R+F C +C RKF+SSQALGGHQNAHK ERT A+K++   R S+   S+ P P S
Subjt:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAK---RISDYPPSESPSPSS

Q39263 Zinc finger protein 42.7e-0844.09Show/hide
Query:  EQTPS---RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFP
        +Q PS   R+F C +C RKF+SSQALGGHQNAHK+ERT A++A R+        P   SSS+  AA                 A AA L C P
Subjt:  EQTPS---RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFP

Q39266 Zinc finger protein 71.9e-0939.09Show/hide
Query:  NNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISD-YPPSESPSPSSSSSVFAATHH-QTHHPGLYPHPMYIANAANLHCF
        N+ + S   E  P R+F C +C RKF+SSQALGGHQNAHK+ERT A++A  +   +     P   +SSS+    H    HH    P P+ ++   +   F
Subjt:  NNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISD-YPPSESPSPSSSSSVFAATHH-QTHHPGLYPHPMYIANAANLHCF

Query:  PNNPPLFYEH
         N  PLF+++
Subjt:  PNNPPLFYEH

Q9FFX4 Zinc finger protein KNUCKLES1.2e-0860Show/hide
Query:  SNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARK
        S S +      R+FPC +C RKF++SQALGGHQNAHK+ER AAR+
Subjt:  SNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARK

Q9FKA9 Protein LATE FLOWERING8.0e-1643.51Show/hide
Query:  EQTPS-RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFPNNPP--LFY
        E T S RIFPCLFCSRKFHSSQALGGHQNAHKKERTAAR+AKR  D+    +     +  VF ++  Q HH  +  +P     +A++ CFP   P    +
Subjt:  EQTPS-RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFPNNPP--LFY

Query:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNK-KIQKLDLSLHL
        +  G +  + +S++       Y  +    +L+   N+ N +K K Q LDLSLHL
Subjt:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNK-KIQKLDLSLHL

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 71.4e-1039.09Show/hide
Query:  NNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISD-YPPSESPSPSSSSSVFAATHH-QTHHPGLYPHPMYIANAANLHCF
        N+ + S   E  P R+F C +C RKF+SSQALGGHQNAHK+ERT A++A  +   +     P   +SSS+    H    HH    P P+ ++   +   F
Subjt:  NNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISD-YPPSESPSPSSSSSVFAATHH-QTHHPGLYPHPMYIANAANLHCF

Query:  PNNPPLFYEH
         N  PLF+++
Subjt:  PNNPPLFYEH

AT1G66140.1 zinc finger protein 42.0e-0944.09Show/hide
Query:  EQTPS---RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFP
        +Q PS   R+F C +C RKF+SSQALGGHQNAHK+ERT A++A R+        P   SSS+  AA                 A AA L C P
Subjt:  EQTPS---RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFP

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein8.8e-1060Show/hide
Query:  SNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARK
        S S +      R+FPC +C RKF++SQALGGHQNAHK+ER AAR+
Subjt:  SNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARK

AT5G48890.1 C2H2-like zinc finger protein5.7e-1743.51Show/hide
Query:  EQTPS-RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFPNNPP--LFY
        E T S RIFPCLFCSRKFHSSQALGGHQNAHKKERTAAR+AKR  D+    +     +  VF ++  Q HH  +  +P     +A++ CFP   P    +
Subjt:  EQTPS-RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFPNNPP--LFY

Query:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNK-KIQKLDLSLHL
        +  G +  + +S++       Y  +    +L+   N+ N +K K Q LDLSLHL
Subjt:  EHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNK-KIQKLDLSLHL

AT5G57520.1 zinc finger protein 28.8e-1047.95Show/hide
Query:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAK---RISDYPPSESPSPSS
        M    ++ +NS +  + P R+F C +C RKF+SSQALGGHQNAHK ERT A+K++   R S+   S+ P P S
Subjt:  MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAK---RISDYPPSESPSPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCATGAACACAACAACCTCTCAAACTCACCTGCAATCGAACAAACCCCATCAAGAATCTTCCCATGTCTATTCTGTTCAAGAAAGTTCCATAGCTCTCAAGCTTT
AGGAGGCCATCAAAATGCCCACAAGAAAGAAAGAACCGCCGCCCGAAAGGCGAAGCGGATATCCGATTACCCACCGTCCGAGTCGCCATCCCCCTCCTCCTCCTCGTCGG
TCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCTATACCCACATCCAATGTACATTGCTAATGCTGCTAATCTTCATTGCTTCCCCAATAATCCACCTTTGTTC
TATGAACACATGGGGTATTATGGTGGGGTTTGTTCAAGCAATAGATATCATCATCATCATCATCAATATGGGGTGGAAGATGAACAAAAGGTGTTGAATTGGCAGAGAAA
CATTAAGAATGATAACAAAAAAATACAAAAACTTGATCTTTCCCTTCATTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCATGAACACAACAACCTCTCAAACTCACCTGCAATCGAACAAACCCCATCAAGAATCTTCCCATGTCTATTCTGTTCAAGAAAGTTCCATAGCTCTCAAGCTTT
AGGAGGCCATCAAAATGCCCACAAGAAAGAAAGAACCGCCGCCCGAAAGGCGAAGCGGATATCCGATTACCCACCGTCCGAGTCGCCATCCCCCTCCTCCTCCTCGTCGG
TCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCTATACCCACATCCAATGTACATTGCTAATGCTGCTAATCTTCATTGCTTCCCCAATAATCCACCTTTGTTC
TATGAACACATGGGGTATTATGGTGGGGTTTGTTCAAGCAATAGATATCATCATCATCATCATCAATATGGGGTGGAAGATGAACAAAAGGTGTTGAATTGGCAGAGAAA
CATTAAGAATGATAACAAAAAAATACAAAAACTTGATCTTTCCCTTCATTTATAG
Protein sequenceShow/hide protein sequence
MKHEHNNLSNSPAIEQTPSRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRISDYPPSESPSPSSSSSVFAATHHQTHHPGLYPHPMYIANAANLHCFPNNPPLF
YEHMGYYGGVCSSNRYHHHHHQYGVEDEQKVLNWQRNIKNDNKKIQKLDLSLHL