CuGenDBv2

Gene ID	CmoCh19G001670
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	NHL domain-containing protein, putative
Genome location	Cmo_Chr19:1050788..1054351
RNA-Seq Expression	CmoCh19G001670
Synteny	CmoCh19G001670
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571580.1 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-37

92.94

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+R QDWEGNGDKQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

XP_022963868.1 uncharacterized protein LOC111464050 isoform X1 [Cucurbita moschata]

7.0e-36

90.59

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED IRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+R QDWEGNG KQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

XP_022963869.1 uncharacterized protein LOC111464050 isoform X2 [Cucurbita moschata]

7.0e-36

90.59

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED IRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+R QDWEGNG KQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

XP_022967189.1 uncharacterized protein LOC111466804 isoform X1 [Cucurbita maxima]

2.2e-37

91.76

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED +RAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+RDQDWEGNGDKQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

XP_022967190.1 uncharacterized protein LOC111466804 isoform X2 [Cucurbita maxima]

2.2e-37

91.76

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED +RAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+RDQDWEGNGDKQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1HJ63 uncharacterized protein LOC111464050 isoform X1

3.4e-36

90.59

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED IRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+R QDWEGNG KQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

A0A6J1HJ76 uncharacterized protein LOC111464050 isoform X3

3.4e-36

90.59

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED IRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+R QDWEGNG KQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

A0A6J1HLG1 uncharacterized protein LOC111464050 isoform X2

3.4e-36

90.59

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED IRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+R QDWEGNG KQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

A0A6J1HTQ7 uncharacterized protein LOC111466804 isoform X2

1.1e-37

91.76

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED +RAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+RDQDWEGNGDKQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

A0A6J1HW28 uncharacterized protein LOC111466804 isoform X1

1.1e-37

91.76

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA
        ++ VGSAQQWYDELDSLAFSP+ESEVVED +RAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRH+RDQDWEGNGDKQAAAAA
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVEDTIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G07060.1 NHL domain-containing protein

7.6e-12

40.22

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Query:  TDLVGSAQQWYDELDSLAFSPRESEVVED------TIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAAA
        ++ +G +QQWYDELDSLA      E  E+          V+   D +  I+C V TSPG+SE+IVYAA+YLR  R+++ E    ++ A   A
Subjt:  TDLVGSAQQWYDELDSLAFSPRESEVVED------TIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAAA

Sequences

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CDS sequence

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ATGCCATTCCCTTGTTCCGCAACCAACCTGGCTTTCAGGTTCCGGCGACTCAAACAAATCTCAAGCCTCAATTCTACTCGGGTACTCCTCAGCCCATCCGTGTTCCATCT
TCAATTTGAATTTGATTCGAATACCTTCGTTTGCTTGGTTGTATGTAGTCATCCTCAAGACATTTTAGTTGTTTACCTATCCGACAAAGTACGAAGAGTACGAAGAGTAC
TGAGTTATGGAGCTGGATCAAGGACCGACTTGGTCGGTTCGGCTCAACAGTGGTATGATGAATTGGATAGTCTAGCCTTTTCACCACGAGAATCAGAAGTGGTGGAAGAT
ACTATAAGAGCTGTTAACCATATTGGAGACGATAAGTTTCAAATTGAGTGTGCTGTCAATACAAGTCCTGGAACTAGCGAGGTTATAGTGTATGCAGCCGTATATTTAAG
GCATAAAAGAGACCAAGATTGGGAAGGCAATGGTGACAAACAAGCAGCAGCAGCAGCAGCAGCCTTTTTCCAAGACTTTTAA

mRNA sequence

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Protein sequence

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MPFPCSATNLAFRFRRLKQISSLNSTRVLLSPSVFHLQFEFDSNTFVCLVVCSHPQDILVVYLSDKVRRVRRVLSYGAGSRTDLVGSAQQWYDELDSLAFSPRESEVVED
TIRAVNHIGDDKFQIECAVNTSPGTSEVIVYAAVYLRHKRDQDWEGNGDKQAAAAAAAFFQDF

CmoCh19G001670 (gene) of Cucurbita moschata (Rifu) v1 genome