CuGenDBv2

Gene ID	CmoCh19G001680
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Poly(A)-specific ribonuclease
Genome location	Cmo_Chr19:1060946..1063744
RNA-Seq Expression	CmoCh19G001680
Synteny	CmoCh19G001680
Gene Ontology terms	GO:0006402 - mRNA catabolic process (biological process) GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0030014 - CCR4-NOT complex (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022928830.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]

1.2e-08

54.29

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYL N NL LKKLAKLLQ+N +G AHFAGS+SLLT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

XP_022967646.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

5.5e-09

57.14

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYLLN NL LKKLAK+LQVN IG AHFAGS+SLLT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

XP_022967647.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

5.5e-09

57.14

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYLLN NL LKKLAK+LQVN IG AHFAGS+SLLT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

XP_022975238.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]

5.5e-09

57.14

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYLLN NL LKKLAK+LQVN IG AHFAGS+SLLT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

XP_023550519.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]

4.2e-09

55.71

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYL N NL LKKLAKLLQ+N IG AHFAGS+SLLT   + ++ + ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1ESM7 Poly(A)-specific ribonuclease

5.9e-09

54.29

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYL N NL LKKLAKLLQ+N +G AHFAGS+SLLT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

A0A6J1HRD6 Poly(A)-specific ribonuclease

2.7e-09

57.14

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYLLN NL LKKLAK+LQVN IG AHFAGS+SLLT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

A0A6J1HSR3 Poly(A)-specific ribonuclease

2.7e-09

57.14

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYLLN NL LKKLAK+LQVN IG AHFAGS+SLLT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

A0A6J1HXB4 Poly(A)-specific ribonuclease

7.7e-09

55.71

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYLLN NL LKKLAK+LQVN IG AHFAGS+S LT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

A0A6J1IIN1 Poly(A)-specific ribonuclease

2.7e-09

57.14

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Query:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ
        MARYSDYLLN NL LKKLAK+LQVN IG AHFAGS+SLLT   + ++   ++  P I     + L Y IQ
Subjt:  MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSP-IRGFHFFSLSYVIQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

5.7e-04

51.28

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Query:  LNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRL
        L ++L L KLA+LLQ+  +G AH AGS+SL+T   F +L
Subjt:  LNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRL

Sequences

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CDS sequence

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ATGGCTCGATACTCCGACTACCTACTCAATGACAACCTAAACTTAAAAAAATTGGCGAAGCTGCTCCAAGTTAATGGCATTGGTATTGCCCACTTTGCTGGGTCTGAAAG
TTTGCTTACGGTATTTGATTTTAACAGACTGAGCAGCCCAGTCCAGTTTAGCCCGATCCGTGGATTTCACTTCTTCTCACTTTCATACGTAATTCAATATTTTGATTGTG
AAATTAAGAAATTATCCGACAAACAATCAATAATCATAACTAGTAGTTGCTCAATTTATGTAGCAGTATCTATTAGAGTTTTCGATCGTGGCCATGGATACCTAGTATTT
AGAGTTTTTGATTGTGGCCATGGATATCGAGGTAAAAAGTTGGTGCTATACCACATTTAG

mRNA sequence

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Protein sequence

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MARYSDYLLNDNLNLKKLAKLLQVNGIGIAHFAGSESLLTVFDFNRLSSPVQFSPIRGFHFFSLSYVIQYFDCEIKKLSDKQSIIITSSCSIYVAVSIRVFDRGHGYLVF
RVFDCGHGYRGKKLVLYHI

CmoCh19G001680 (gene) of Cucurbita moschata (Rifu) v1 genome