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CmoCh19G001690 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh19G001690
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationCmo_Chr19:1065075..1065518
RNA-Seq ExpressionCmoCh19G001690
SyntenyCmoCh19G001690
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022928830.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]8.3e-1076.19Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+WT K  S+EEFY+CLQFN+NRLSIL+LGLTLT++NGKI
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
XP_022963784.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]9.8e-1180.95Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+WT K  S+EEFYECLQFN+NRLSIL+LGLTLTN+NGKI
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
XP_022963785.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]9.8e-1180.95Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+WT K  S+EEFYECLQFN+NRLSIL+LGLTLTN+NGKI
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
XP_023511526.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]9.8e-1180.95Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+WT K  S+EEFYECLQFN+NRLSIL+LGLTLTN+NGKI
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
XP_023511528.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]9.8e-1180.95Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+WT K  S+EEFYECLQFN+NRLSIL+LGLTLTN+NGKI
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
TrEMBL top hitse value%identityAlignment
A0A6J1ESM7 Poly(A)-specific ribonuclease4.0e-1076.19Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+WT K  S+EEFY+CLQFN+NRLSIL+LGLTLT++NGKI
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
A0A6J1HIZ7 Poly(A)-specific ribonuclease4.7e-1180.95Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+WT K  S+EEFYECLQFN+NRLSIL+LGLTLTN+NGKI
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
A0A6J1HL76 Poly(A)-specific ribonuclease4.7e-1180.95Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+WT K  S+EEFYECLQFN+NRLSIL+LGLTLTN+NGKI
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
A0A6J1HSR3 Poly(A)-specific ribonuclease1.3e-0873.81Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+ T K  S+EEFY+CLQFN+NRLSIL+LGLTLT+ENG+I
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
A0A6J1HXB4 Poly(A)-specific ribonuclease1.3e-0873.81Show/hide
Query:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
        GFL+ T K  S+EEFY+CLQFN+NRLSIL+LGLTLT+ENG+I
Subjt:  GFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGGTACAACGACTATCTACTCAATGACAATCTAGGCTTAAAAAAACTATCGAAGCTTCTCCAAATTAACCGCATTGGATTTCTAAAATGGACTTCAAAAGCTGG
TTCAGAAGAAGAATTCTATGAATGCCTCCAATTTAACCTGAATCGACTTAGTATTCTCGAGTTAGGACTAACACTTACCAATGAGAATGGAAAAATAAGAAACGTGGGAG
TTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGGTACAACGACTATCTACTCAATGACAATCTAGGCTTAAAAAAACTATCGAAGCTTCTCCAAATTAACCGCATTGGATTTCTAAAATGGACTTCAAAAGCTGG
TTCAGAAGAAGAATTCTATGAATGCCTCCAATTTAACCTGAATCGACTTAGTATTCTCGAGTTAGGACTAACACTTACCAATGAGAATGGAAAAATAAGAAACGTGGGAG
TTTAA
Protein sequenceShow/hide protein sequence
MARYNDYLLNDNLGLKKLSKLLQINRIGFLKWTSKAGSEEEFYECLQFNLNRLSILELGLTLTNENGKIRNVGV